Gene detail

Detail information of GWHGAAZE018308

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010266868.1	PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Nelumbo nucifera]
Swissprot	tr\|Q06364\|PSMD3_DAUCA	Probable 26S proteasome non-ATPase regulatory subunit 3
trEMBL	tr\|F6I0Z2\|F6I0Z2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60608.1}
TAIR10	AT1G75990.1	PAM domain (PCI/PINT associated module) protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17761276	17779299	+
GWHAAZE00000005	mRNA	17761276	17779299	+
GWHAAZE00000005	exon	17761276	17761880	+
GWHAAZE00000005	exon	17765090	17765168	+
GWHAAZE00000005	exon	17766741	17766797	+
GWHAAZE00000005	exon	17767254	17767309	+
GWHAAZE00000005	exon	17767928	17768162	+
GWHAAZE00000005	exon	17768750	17768836	+
GWHAAZE00000005	exon	17769073	17769147	+
GWHAAZE00000005	exon	17769318	17769401	+
GWHAAZE00000005	exon	17769555	17769619	+
GWHAAZE00000005	exon	17769698	17769950	+
GWHAAZE00000005	exon	17770033	17770121	+
GWHAAZE00000005	exon	17770351	17770465	+
GWHAAZE00000005	exon	17774070	17774160	+
GWHAAZE00000005	exon	17774247	17774437	+
GWHAAZE00000005	exon	17774747	17774884	+
GWHAAZE00000005	exon	17774972	17775108	+
GWHAAZE00000005	exon	17775969	17776023	+
GWHAAZE00000005	exon	17776099	17776209	+
GWHAAZE00000005	exon	17777755	17777994	+
GWHAAZE00000005	exon	17778787	17779299	+
GWHAAZE00000005	CDS	17761276	17761880	+
GWHAAZE00000005	CDS	17765090	17765168	+
GWHAAZE00000005	CDS	17766741	17766797	+
GWHAAZE00000005	CDS	17767254	17767309	+
GWHAAZE00000005	CDS	17767928	17768162	+
GWHAAZE00000005	CDS	17768750	17768836	+
GWHAAZE00000005	CDS	17769073	17769147	+
GWHAAZE00000005	CDS	17769318	17769401	+
GWHAAZE00000005	CDS	17769555	17769619	+
GWHAAZE00000005	CDS	17769698	17769950	+
GWHAAZE00000005	CDS	17770033	17770121	+
GWHAAZE00000005	CDS	17770351	17770465	+
GWHAAZE00000005	CDS	17774070	17774160	+
GWHAAZE00000005	CDS	17774247	17774437	+
GWHAAZE00000005	CDS	17774747	17774884	+
GWHAAZE00000005	CDS	17774972	17775108	+
GWHAAZE00000005	CDS	17775969	17776023	+
GWHAAZE00000005	CDS	17776099	17776209	+
GWHAAZE00000005	CDS	17777755	17777994	+
GWHAAZE00000005	CDS	17778787	17779299	+

Transcript Sequence
>GWHTAAZE018330 ATGGATTTTGACGAGTATGATTACTTAGAGAAGACAGTTGAAAATCCAGAACCTCAGAAATCGAAGGAAATAGAAAATGGCAGTGAAGAAATGGTCAAGCATGAAGATAAAGACCGAAGGCGGAGTTCAAAGCACAAAAATGATGAGAATGGTGATGATTATCGTCGATCGAAGCACTCGAAGCTTGGAGACGAGTCTCATGACCGTGACAGGGAAAGGGGTTCGTCGCGTCATCGCTCATCCCCAAGAGATGGGGACAGGAGTGATAGGGATAAACACAAAAGTAGCCGAGAACATAGAGACAGGGACAAGGATAGAGAGAAGGAGGAGAAGAATGGAAAGGAGAGGGAGAGAGACAGAGACAGAGACAAGGGCTTAGATAGGGAGAAGGACCGTGATCGGCATAGGAGGGATCGTGACCGTGGATATGAGAAAGAGAAGGAGAGGGAGAGAGAGCGGGAGCCCTCACGTCGAAGCAGAAGCCACTCAGTAAGGCATAAAGATGAGCCGGATAGGGAGAAGAGCCGAGACAGGGAGAAGAGTCGGGACAGGGAAAAGAGAGAAAGGGAAAAGGAGAGGGAACTAAGAGAACCAGAACGAGAAAGGCGGCATAAAGAGAAGAAGGAAGAGGCGGAGCCAGAGGTTGATCCTGAACGAGATCAGCGAACTGTTTTTGCTTATCAGATATGCTTGAAGGCAGATGAAAGAGATGTGTACGAGTTCTTCTCCAGGGCTGGCAAGGTTCGCGATGTACGCCTCATAATGGACCGCAATTCAAGACGTTCAAAAGGCGTTGGGTATATCGAATTTTATGATGCAATGTCTGTACCCATGGCAATAGCACTCTCTGGTCAGCCTCTTCTTGGTCAACCAGTGATGGTTAAGCCGTCAGAAGCGGAAAAGAATCTTGTTCAGTCTACTGCATCTGCTGGTGGAAGTGCAGGTGGGCTAATTGGCCCGTATTCAGGGGGAGCTAGAAAGCTGTATGTTGGCAATCTGCATTACAATATCAAAGAAGATCAACTTCGACAGGTCTTTGAACCATTTGGTGCTGTGGAGCTGGTGCAGTTGCCTACTGACCCAGACACCGGGAATTGCAAAGGTTATGGTTTTATTCAGTTTGCACGCCTTGAAGATGCTAGGGCTGCAGAGAGCTTGAATGGGCAGTTGGAGATTGCAGGTCGAGCAATCAAGGTCTCAGCCATTACTGATCAAGCTGGAATTCAAGATGGTGGGGCAAATCCTGGCGACTTTGATGATGACGAGGGTGGTGGTCTGTCTCTGAATGCACGTTCTCGAGCACTTCTTATGCAGAAACTGGACCGTAGTGGGACAGCATCGAGCGTTACTGCTTCATTAGGCACAGCTGTTAATAGTCCTGCAGGCCTTGCACTACCGACAGTACCGAGTCTTGGTGCCCCTCTCGGAGTTTCTTCCCTTGTTTCTCCTCTTGGTCAGGCTCCTGTTCCTGCACTTGCAGGATTGCCTGGTGCAGCAGGTCTTTCAGCTGCTGGTATTGCCGTTCCTTCCGTTGATACCATTGGTGTTCCTAGTGAATGTTTGCTGTTGAAGAACATGTTTGATCCAAGCCTAGAGCAAGAGCCAGATTTCGATTTGGACATTAAAGACGACGTTCAAGATGAATGTTCAAAGTTTGGTGCTCTAAAGCATATTTATGTGGACAAGAATACTGCTGGGTTTGTATACTTGCGATTTGAAAACACGCAAGCTGCAATAAGCGCCCAGCGTGCGCTCCATGGGAGATGGTTTGCTGGGAAGATGATCACTGCAACATTTATGAGTTTCAGCAACATGACTCAAGATGTTGAGATGAAAGAGCTCCCAGCTCCTTCAAATTCCGTCTCCTCAACTGGTCCCTCAACTCTGCAGCAGTTGAAGGAGATTTCGTCACTGATTGAGACCGGAGCTTATGCGAGGGAGGTTCGTCGGATTGTGAGGGCTGTTCGCCTAACCATTGCATTGAGGCGAAAGCTGAAGGCCTCTGTAGTTTCTGCCTTCCTTAACTTTGCACTTTCGCCTGGATCTGAGGCACTCACTAGATTATCTTCATATTTGCCCAAGGAAGATGAGCATGATATGGAAGTCGATACCGCTTCCTCTACGACTCAGGCTCCAGTGAAGCACTCTTTACCTGAACTTGAGATTTACTGTTATTTGCTCGTGCTAATATTTTTGATTGATCAGAAGAAGTACCCTGAGGCTAAAGCTTGTTCCTCCTCAAGCATTGCCCGTCTGAAGAACCTAAATAAGCGCACTGTTGATGTTCTAGCGTCTAGGCTCTATTTCTATTACTCTCTTAGCTATGAACTTACTGGCGATCTTGCTGAAATTCGTGGTAATCTCCTTGCCTTGCACCGGATTGCAACATTGCGCCATGATGAGTTGGGCCAGGAAACCCTTCTCAATCTACTACTTCGCAATTATCTCCATTATAATTTATATGATCAAGCTGAGAAGCTGAGGTCTAAGGCACCACGTTTCGAAGCTCATTCGAATCAGCAGTTCTGTAGGTACCTCTTTTACCTTGGAAAGATAAGGACGATTCAGCTAGAGTATACAGATGCAAAAGAGTCCCTCCTCCAAGCTGCTAGGAAAGCCCCTGTAGCAGCTCTTGGTTTCAGAGTTCAATGCAATAAGTGGGCTGTGATCGTCCGGCTACTGCTTGGGGAGATCCCTGAGCGAACTGTTTTTATGCAGAAGGGTATGGAGAAGGCATTGAGGCCATATTTTGAGCTTACAAATGCTGTTCGAATTGGAGACCTCGAGCTGTTTAGAACCGTGGCTGATAAATTCTCAAGTACTTTCACCGCAGACCGGACCCACAACTTGATCGTTAGGCTGAGGCACAATGTCATAAGGACTGGGCTCCGAAACATAAGTATATCTTACTCCCGCATTTCCTTGGTCGATGTTGCCAAAAAGCTGAGATTGGACTCACCAAACCCAGTTGCGGATGCCGAGAGCATTGTGTCCAAGGCGATCCGAGACGGTGCCATTGATGCTACATTGGATCATGCAAACGGGTGGATGGTATCGAAGGAGACGGGGGACATTTACTCTACAAATGAGCCTCAGATTGCGTTCAACTCTAGGATAGCTTTCTGTCTTAATATGCATAATGAGGCGGTCCGCGCCCTTCGATTTCCACCAAATTCCCACAAGGAGAAAGAAAGCGCGGAGAAGAGGAGAGAGAGACAACAGCAGGAACAAGAGCTTGCCAAGCATATAGCTGAGGAAGATGATGATGAGTTCTAA

Network for GWHGAAZE018308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	233	291	1.80E-08
PF00076.23	RRM_1	328	398	4.90E-19
PF15519.7	RBM39linker	418	536	1.10E-19
PF00076.23	RRM_1	543	595	0.0002
PF01399.28	PCI	915	1020	6.10E-21
PF08375.12	Rpn3_C	1024	1089	1.60E-25

Protein Sequence

>GWHPAAZE018319
MDFDEYDYLEKTVENPEPQKSKEIENGSEEMVKHEDKDRRRSSKHKNDENGDDYRRSKHSKLGDESHDRDRERGSSRHRSSPRDGDRSDRDKHKSSREHRDRDKDREKEEKNGKERERDRDRDKGLDREKDRDRHRRDRDRGYEKEKEREREREPSRRSRSHSVRHKDEPDREKSRDREKSRDREKREREKERELREPERERRHKEKKEEAEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASAGGSAGGLIGPYSGGARKLYVGNLHYNIKEDQLRQVFEPFGAVELVQLPTDPDTGNCKGYGFIQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGIQDGGANPGDFDDDEGGGLSLNARSRALLMQKLDRSGTASSVTASLGTAVNSPAGLALPTVPSLGAPLGVSSLVSPLGQAPVPALAGLPGAAGLSAAGIAVPSVDTIGVPSECLLLKNMFDPSLEQEPDFDLDIKDDVQDECSKFGALKHIYVDKNTAGFVYLRFENTQAAISAQRALHGRWFAGKMITATFMSFSNMTQDVEMKELPAPSNSVSSTGPSTLQQLKEISSLIETGAYAREVRRIVRAVRLTIALRRKLKASVVSAFLNFALSPGSEALTRLSSYLPKEDEHDMEVDTASSTTQAPVKHSLPELEIYCYLLVLIFLIDQKKYPEAKACSSSSIARLKNLNKRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRTVADKFSSTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03033	PSMD3, RPN3	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006397	biological_process	mRNA processing
GO:0042176	biological_process	regulation of protein catabolic process
GO:0005634	cellular_component	nucleus
GO:0000502	cellular_component	proteasome complex
GO:0003723	molecular_function	RNA binding
GO:0003676	molecular_function	nucleic acid binding
GO:0030234	molecular_function	enzyme regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	128.614
	SRR3591706	second leaf	77.613
	SRR3591707	mature leaf	76.556
	SRR3591708	Shoot apex	131.726
	SRR3591709	Stem	140.420
	SRR3591710	White floral bud	126.340
	SRR3591711	White flower	140.753
	SRR3591712	Green floral bud	108.579
	SRR3591713	Yellow flower	117.991
SRP173429	SRR8316895	Juvenile bud stage	86.793
	SRR8316896	Juvenile bud stage	117.863
	SRR8316897	Juvenile bud stage	57.137
	SRR8316894	Third green stage	49.042
	SRR8316900	Third green stage	106.072
	SRR8316901	Third green stage	113.932
	SRR8316898	Complete white stage	42.035
	SRR8316899	Complete white stage	124.968
	SRR8316903	Complete white stage	94.430
	SRR8316902	Silver flowering stage	55.362
	SRR8316904	Silver flowering stage	76.784
	SRR8316905	Silver flowering stage	37.425
	SRR8316906	Gold flowering stage	113.266
	SRR8316907	Gold flowering stage	118.420
	SRR8316908	Gold flowering stage	126.364
SRP132670	SRR6706286	Control	139.508
	SRR6706287	Light intensity 50%	138.084
	SRR6706288	Light intensity 20%	138.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	89.494
	CNS0095593	Slightly white alabastrum(diploid) 2	96.831
	CNS0095594	Slightly white alabastrum(diploid) 3	79.574
	CNS0095595	Whole white alabastrum(diploid) 2	76.775
	CNS0095596	Whole white alabastrum(diploid) 3	63.983
	CNS0095597	Whole white alabastrum(diploid) 4	66.755
	CNS0095598	Silvery flower (diploied) 1	105.304
	CNS0095599	Silvery flower (diploied) 2	91.226
	CNS0095600	Silvery flower (diploied) 3	89.384
	CNS0095601	Golden flower (diploid) 1	95.732
	CNS0095602	Golden flower (diploid) 2	105.884
	CNS0095603	Golden flower (diploid) 3	97.684
	CNS0095604	Slightly white alabastrum(tetraploid) 1	92.211
	CNS0095605	Slightly white alabastrum(tetraploid) 2	78.354
	CNS0095606	Slightly white alabastrum(tetraploid) 3	149.167
	CNS0095607	Whole white alabastrum(tetraploid) 1	60.953
	CNS0095608	Whole white alabastrum(tetraploid) 2	45.765
	CNS0095609	Whole white alabastrum(tetraploid) 3	92.101
	CNS0095610	Silvery flower (tetraploid) 1	130.606
	CNS0095611	Silvery flower (tetraploid) 2	109.851
	CNS0095612	Silvery flower (tetraploid) 3	108.788
	CNS0095613	Golden flower (tetraploid) 1	93.201
	CNS0095614	Golden flower (tetraploid) 2	120.482
	CNS0095615	Golden flower (tetraploid) 3	109.981
CRA001975	CRR073297	Stem 1	153.401
	CRR073298	Stem 2	140.559
	CRR073299	Stem 3	115.096
	CRR073300	Leaf 1	161.268
	CRR073301	Leaf 2	164.485
	CRR073302	Leaf 3	99.172
	CRR073303	Juvenile bud 1	103.765
	CRR073304	Juvenile bud 2	83.552
	CRR073305	Juvenile bud 3	140.498
	CRR073306	Third green 1	52.549
	CRR073307	Third green 2	49.403
	CRR073308	Third green 3	53.279
	CRR073309	Second white 1	78.001
	CRR073310	Second white 2	65.992
	CRR073311	Second white 3	65.927
	CRR073312	Silver flowering 1	61.505
	CRR073313	Silver flowering 2	73.360
	CRR073314	Silver flowering 3	62.234
	CRR073315	Gold flowering 1	48.111
	CRR073316	Gold flowering 2	66.580
	CRR073317	Gold flowering 3	55.906
	CRR073318	Tawny withering 1	115.953
	CRR073319	Tawny withering 2	98.721
	CRR073320	Tawny withering 3	114.631