Gene detail

Detail information of GWHGAAZE018310

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002277945.1	PREDICTED: probable ubiquitin-conjugating enzyme E2 23 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9ZVX1\|UBC23_ARATH	Probable ubiquitin-conjugating enzyme E2 23
trEMBL	tr\|F6I0Z4\|F6I0Z4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60610.1}
TAIR10	AT2G16920.1	ubiquitin-conjugating enzyme 23

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17791812	17799449	+
GWHAAZE00000005	mRNA	17791812	17799449	+
GWHAAZE00000005	exon	17791812	17793854	+
GWHAAZE00000005	exon	17795481	17795621	+
GWHAAZE00000005	exon	17796728	17797216	+
GWHAAZE00000005	exon	17797685	17797754	+
GWHAAZE00000005	exon	17797861	17798000	+
GWHAAZE00000005	exon	17799195	17799449	+
GWHAAZE00000005	CDS	17791812	17793854	+
GWHAAZE00000005	CDS	17795481	17795621	+
GWHAAZE00000005	CDS	17796728	17797216	+
GWHAAZE00000005	CDS	17797685	17797754	+
GWHAAZE00000005	CDS	17797861	17798000	+
GWHAAZE00000005	CDS	17799195	17799449	+

Transcript Sequence
>GWHTAAZE018332 ATGGAAAACAAGCAACATAGTGATGCTTCCAACGTTAGTGAGCCAACAACAGTTGGAAATGATAATGCCATTTCGAACCAAGGTGACTCCATGTTAAATGGGCATAGTGAAGATCCAAATATGATTTCCAAAAGCAAGGCGGATGAGGCTATTAGTAACCTGCAAAGTGCCTCTTATATTTATAGACAAGATGTCGTGAGGAGCAAAACGAGTGGTCGCATTGGGATTGTGACTGAAGTTGCTGGTGACTCTGATTCAGATAGCAGCTCCAGTGATGACGACGATGATGACTATGACGGGGCTGGTGAAAATGAGGAAGGTGGTGTAGATGACAGTGGAGATACTAATGAGAGTACAGATGGGAACAGGGATGGTAGTAATTATAAGAGCAGTCCTCTCCCAGATGACCAAGTTCGAGTGCTTTGGATGGATGAGTCCGAGACAACACAAAATCTTAATGATGTGACAGTCATTGATAGGGGATTTTTGCACGGGGATTTTGTTGCTGCTGCTTCGGAGCCGACAGGTCAGGTTGGTGTAGTGGTCGATGTCAATATTTTCATTGATTTGTTAAAAAGTGATGGGTCTGTTATAAGCAATGTCTCATGCAGAGACATAAAACGTGTGAGAGATTTCACAGTGGGTGATTATGTAGTCCTTGGTCCCTGGCTGGGTAGACTTGATGATGTTTTGGATAATGTGACAGTGTCATTTGATGATGGTTCCGTGTGTAAAGTTATGAAGGCTGACCCAACGCGTCTTAAGCCGGTTGGCAAGAATATTCTTGAAGACGGACATTTCCCTTACTATCCCGGTCAGCGTGTCAAGGCTAGCTCTTCATCAGTTTTCAAGAATTCTAGGTGGCTGTCTGGCTTGTGGAAAGCTAATCGGCTGGAAGGTACAGTAACTAAAGTTACAGTTGGTTCAGTGTTTGTTTATTGGATAGCATCTGCGGGGTATGGGCCTGACTCATCTACCACCCCTGATCAAGAGCAGAGTCCCAAGAACTTGAAGTTATTGTCTTGTTTTACTCACGCAAACTGGCAGTTGGGTGACTGGTGTCTTCTTCCATCGCCCACATTGTCCTCCTCTACTCCACTGGACAAGGGTTTATCAAAATTAGGCCTTGATGATTCTACTAAAGATGAATTAGGGAACAGTCATATAAGACCAGACAGTGATTCAGAAGTGGTCACTTCGGAAGAATCAAAAGGGAACAGTAATTTAATGGATATTGATGCAGTTACTAAATTGGATGGAAAGAGCGCAAATATAGAAAATAATAACGTCTCTAATGAATCAAGCTCATGCAGTAGTTCATTGTCAGTTTCAAAGGAGCCTGTCCATGAGTCATGGCCTCTTCATAGAAAAAAGATCCGTAAAGTTGTGGTTAGAAGGGATAAGAAGGCTAGGAGAAAAGAGGAGAACTTTGAAAGAGCTCTTTTAATTGTCAACACTAAGACAAGAGTTGATGTGGCATGGCAGGATGGAACAACAGAGTGTGGATTGGATTCCACGGCTTTGATTCCGATTGATAGTCCCGGTGACCATGAATTTGTTGCCGAACAATATGTGGTGGAGAAGAACACTGATGACAATGATGATACTGCTGAAGTTAGGCGAGTTGGGGTTGTGAAAAGTGTTAATGCCAAAGAGAGGACTGCTTGTGTGAGGTGGTTAAAGTCCGTTGCCAGGGCTGAAGATCCAAAAGAGTTTGCGAAGGAGGAAGTGGTAAGTGTTTATGAGCTCGAGGGTCATCCCGATTATGACTACTGTTATGGGGATGTTGTTGTCCGACTGTCACCCGTTTTTTTACCACCACAAACAGATTCATTGAAGAGCTCTGGCGAGGATTCAAAGCAACTAGCTAGTCTGAGCGAGGTCGAAAGGGATAAGGAAAGTCACTCTAATTGTAAGAAGGTAGAGGGGGCATCCACTGATGAAACTTGCAAAGATTTCTCAGATCTCTCCTGGGTTGGGAACATCACTGGGCTCAGAAATGGTGATATCGAAGTTACATGGGCTGATGGGATGATATCAATGGTTGGGCCTCAAGCGATTTATGTTGTTGGCCGGGATGATGATGATGAGTCAGTTGGAGCTGGAAGTGAGGTTAGTGATGATGCAGCCAGCTGGGAAACAGTTCAGGATGATGAATTGGACACCCTTGAGAATGCAGAACAGGGCCTGGAGTTGCAAAATGTCACTGACATCAATCCCGAGGCAGAAGATAGCACAATTGTTGCAGATAATGCTGGAGGAGCTCTTTCTATTCCCCTGGCTGCCATTGGATTTATGACCAGACTGGCCACCGGCATATTTTCCAAGGGTCGCAAAAACTTGGATCCATCTAGTTCAGTTTCCCAGGGTGAAAACGATCTTCAGTCTCCAGGGACTGCAAATTTCTCTTCAAAAGGAGAGAGTACTGACGAATCTAACTCCAAGAAACAAATTGATGTCAATAATTTTAATTCTCTAACTTCCCATGGAGGAGATGATGAACATGTTGATACCGAGGCCAAAGATTTGTTGGACGTGGCAGAAGCTCTTTGCAGCTTAAAGCCTGAAGAACCAAATGCTCCAGCACGACACAGAGATGAAACTTCCTTTTTCAAAGGATTTGATATTACTAAAGATCCTTACGATCATTATTTTCTTGGTTCTAATGGACAGAATAATTCTGGACGAAAATGGCTCAAGAAGGTCCAACAAGATTGGAATATCCTTCAGAATAACCTGCCTGATGGGATTTACGTACGAGTATATGAAGATCGAATGGATCTTTTGAGATCGGTGATAGTTGGAGCATATGGGACACCATACCAAGATGGCCTTTTCTTTTTTGATTTTCACCTTCCACCAGAGTACCCTGATGTTCCACCTGACTTTGATGCTCTTATCAGAGAGCATTTCAAGAGACAGGGTTATTACATACTCAAGGCCTGTGATGCTTACATGAAAGGCTACTTGATCGGAACTCTGACAAAGGATGCCTCCGTAAGTGATAAGAGCATAGCTAATGCAAATTCTGTTGGATTCAAGCTAATGTTGGCTAAGATTGTGCCAAAGCTTTTTGTTGCACTAAATGAAGTTGGAGCCGATTGTCATGAGTTCAAGCATCTCCAAAAACAGTTGTAA

Network for GWHGAAZE018310

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	902	963	1.20E-08

Protein Sequence

>GWHPAAZE018321
MENKQHSDASNVSEPTTVGNDNAISNQGDSMLNGHSEDPNMISKSKADEAISNLQSASYIYRQDVVRSKTSGRIGIVTEVAGDSDSDSSSSDDDDDDYDGAGENEEGGVDDSGDTNESTDGNRDGSNYKSSPLPDDQVRVLWMDESETTQNLNDVTVIDRGFLHGDFVAAASEPTGQVGVVVDVNIFIDLLKSDGSVISNVSCRDIKRVRDFTVGDYVVLGPWLGRLDDVLDNVTVSFDDGSVCKVMKADPTRLKPVGKNILEDGHFPYYPGQRVKASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFVYWIASAGYGPDSSTTPDQEQSPKNLKLLSCFTHANWQLGDWCLLPSPTLSSSTPLDKGLSKLGLDDSTKDELGNSHIRPDSDSEVVTSEESKGNSNLMDIDAVTKLDGKSANIENNNVSNESSSCSSSLSVSKEPVHESWPLHRKKIRKVVVRRDKKARRKEENFERALLIVNTKTRVDVAWQDGTTECGLDSTALIPIDSPGDHEFVAEQYVVEKNTDDNDDTAEVRRVGVVKSVNAKERTACVRWLKSVARAEDPKEFAKEEVVSVYELEGHPDYDYCYGDVVVRLSPVFLPPQTDSLKSSGEDSKQLASLSEVERDKESHSNCKKVEGASTDETCKDFSDLSWVGNITGLRNGDIEVTWADGMISMVGPQAIYVVGRDDDDESVGAGSEVSDDAASWETVQDDELDTLENAEQGLELQNVTDINPEAEDSTIVADNAGGALSIPLAAIGFMTRLATGIFSKGRKNLDPSSSVSQGENDLQSPGTANFSSKGESTDESNSKKQIDVNNFNSLTSHGGDDEHVDTEAKDLLDVAEALCSLKPEEPNAPARHRDETSFFKGFDITKDPYDHYFLGSNGQNNSGRKWLKKVQQDWNILQNNLPDGIYVRVYEDRMDLLRSVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPDFDALIREHFKRQGYYILKACDAYMKGYLIGTLTKDASVSDKSIANANSVGFKLMLAKIVPKLFVALNEVGADCHEFKHLQKQL

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10581	UBE2O	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.385
	SRR3591706	second leaf	12.377
	SRR3591707	mature leaf	9.502
	SRR3591708	Shoot apex	14.328
	SRR3591709	Stem	19.948
	SRR3591710	White floral bud	18.407
	SRR3591711	White flower	16.902
	SRR3591712	Green floral bud	18.542
	SRR3591713	Yellow flower	12.481
SRP173429	SRR8316895	Juvenile bud stage	11.263
	SRR8316896	Juvenile bud stage	13.475
	SRR8316897	Juvenile bud stage	7.043
	SRR8316894	Third green stage	6.648
	SRR8316900	Third green stage	16.546
	SRR8316901	Third green stage	16.754
	SRR8316898	Complete white stage	5.459
	SRR8316899	Complete white stage	19.084
	SRR8316903	Complete white stage	11.548
	SRR8316902	Silver flowering stage	5.320
	SRR8316904	Silver flowering stage	10.641
	SRR8316905	Silver flowering stage	4.514
	SRR8316906	Gold flowering stage	14.102
	SRR8316907	Gold flowering stage	13.270
	SRR8316908	Gold flowering stage	13.293
SRP132670	SRR6706286	Control	19.120
	SRR6706287	Light intensity 50%	18.917
	SRR6706288	Light intensity 20%	19.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.141
	CNS0095593	Slightly white alabastrum(diploid) 2	6.424
	CNS0095594	Slightly white alabastrum(diploid) 3	5.705
	CNS0095595	Whole white alabastrum(diploid) 2	6.932
	CNS0095596	Whole white alabastrum(diploid) 3	6.000
	CNS0095597	Whole white alabastrum(diploid) 4	5.864
	CNS0095598	Silvery flower (diploied) 1	12.341
	CNS0095599	Silvery flower (diploied) 2	9.555
	CNS0095600	Silvery flower (diploied) 3	16.448
	CNS0095601	Golden flower (diploid) 1	6.863
	CNS0095602	Golden flower (diploid) 2	17.100
	CNS0095603	Golden flower (diploid) 3	16.532
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.246
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.712
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.324
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.989
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.362
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.898
	CNS0095610	Silvery flower (tetraploid) 1	14.927
	CNS0095611	Silvery flower (tetraploid) 2	14.423
	CNS0095612	Silvery flower (tetraploid) 3	10.805
	CNS0095613	Golden flower (tetraploid) 1	6.056
	CNS0095614	Golden flower (tetraploid) 2	12.952
	CNS0095615	Golden flower (tetraploid) 3	13.616
CRA001975	CRR073297	Stem 1	15.358
	CRR073298	Stem 2	13.966
	CRR073299	Stem 3	10.634
	CRR073300	Leaf 1	15.054
	CRR073301	Leaf 2	12.332
	CRR073302	Leaf 3	10.007
	CRR073303	Juvenile bud 1	9.695
	CRR073304	Juvenile bud 2	7.836
	CRR073305	Juvenile bud 3	13.630
	CRR073306	Third green 1	5.928
	CRR073307	Third green 2	5.008
	CRR073308	Third green 3	6.585
	CRR073309	Second white 1	6.225
	CRR073310	Second white 2	6.271
	CRR073311	Second white 3	7.902
	CRR073312	Silver flowering 1	8.142
	CRR073313	Silver flowering 2	8.703
	CRR073314	Silver flowering 3	6.767
	CRR073315	Gold flowering 1	3.613
	CRR073316	Gold flowering 2	7.619
	CRR073317	Gold flowering 3	3.957
	CRR073318	Tawny withering 1	7.689
	CRR073319	Tawny withering 2	6.262
	CRR073320	Tawny withering 3	8.943