Detail information of GWHGAAZE018311


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010327398.12.5122E-135PREDICTED: pre-mRNA-splicing factor syf2 isoform X2 [Solanum lycopersicum]
trEMBLtr|M1CJD6|M1CJD6_SOLTU6E-135Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400068702}
TAIR10AT2G16860.14E-89GCIP-interacting family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1781203617814837+
GWHAAZE00000005mRNA1781203617814837+
GWHAAZE00000005exon1781203617812129+
GWHAAZE00000005exon1781345317813601+
GWHAAZE00000005exon1781377617814016+
GWHAAZE00000005exon1781437617814512+
GWHAAZE00000005exon1781461017814837+
GWHAAZE00000005CDS1781203617812129+
GWHAAZE00000005CDS1781345317813601+
GWHAAZE00000005CDS1781377617814016+
GWHAAZE00000005CDS1781437617814512+
GWHAAZE00000005CDS1781461017814837+
Transcript Sequence

Network for GWHGAAZE018311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08231.13SYF21282753.00E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12868SYF2 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.391
SRR3591706second leaf37.027
SRR3591707mature leaf44.360
SRR3591708Shoot apex54.577
SRR3591709Stem63.956
SRR3591710White floral bud58.788
SRR3591711White flower89.689
SRR3591712Green floral bud60.910
SRR3591713Yellow flower80.037
SRP173429 SRR8316895Juvenile bud stage 36.249
SRR8316896Juvenile bud stage 49.593
SRR8316897Juvenile bud stage 22.035
SRR8316894Third green stage 20.120
SRR8316900Third green stage 57.635
SRR8316901Third green stage 56.837
SRR8316898Complete white stage 32.059
SRR8316899Complete white stage 73.481
SRR8316903Complete white stage 43.778
SRR8316902Silver flowering stage44.009
SRR8316904Silver flowering stage54.935
SRR8316905Silver flowering stage28.442
SRR8316906Gold flowering stage 93.425
SRR8316907Gold flowering stage 90.498
SRR8316908Gold flowering stage 100.675
SRP132670SRR6706286Control28.427
SRR6706287Light intensity 50%29.826
SRR6706288Light intensity 20%29.505
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.772
CNS0095593Slightly white alabastrum(diploid) 240.918
CNS0095594Slightly white alabastrum(diploid) 339.012
CNS0095595Whole white alabastrum(diploid) 235.047
CNS0095596Whole white alabastrum(diploid) 333.692
CNS0095597Whole white alabastrum(diploid) 435.512
CNS0095598Silvery flower (diploied) 149.269
CNS0095599Silvery flower (diploied) 244.499
CNS0095600Silvery flower (diploied) 363.940
CNS0095601Golden flower (diploid) 145.212
CNS0095602Golden flower (diploid) 258.577
CNS0095603Golden flower (diploid) 362.658
CNS0095604Slightly white alabastrum(tetraploid) 133.592
CNS0095605Slightly white alabastrum(tetraploid) 231.111
CNS0095606Slightly white alabastrum(tetraploid) 346.929
CNS0095607Whole white alabastrum(tetraploid) 124.632
CNS0095608Whole white alabastrum(tetraploid) 227.190
CNS0095609Whole white alabastrum(tetraploid) 342.888
CNS0095610Silvery flower (tetraploid) 173.425
CNS0095611Silvery flower (tetraploid) 279.678
CNS0095612Silvery flower (tetraploid) 349.954
CNS0095613Golden flower (tetraploid) 162.282
CNS0095614Golden flower (tetraploid) 269.531
CNS0095615Golden flower (tetraploid) 359.753
CRA001975CRR073297Stem 151.829
CRR073298Stem 251.038
CRR073299Stem 349.116
CRR073300Leaf 140.198
CRR073301Leaf 245.806
CRR073302Leaf 336.402
CRR073303Juvenile bud 140.999
CRR073304Juvenile bud 233.340
CRR073305Juvenile bud 338.862
CRR073306Third green 123.634
CRR073307Third green 220.250
CRR073308Third green 319.572
CRR073309Second white 124.049
CRR073310Second white 235.571
CRR073311Second white 333.082
CRR073312Silver flowering 121.244
CRR073313Silver flowering 221.227
CRR073314Silver flowering 320.519
CRR073315Gold flowering 148.309
CRR073316Gold flowering 259.257
CRR073317Gold flowering 323.771
CRR073318Tawny withering 142.330
CRR073319Tawny withering 244.331
CRR073320Tawny withering 338.614