Gene detail

Detail information of GWHGAAZE018319

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797256.1	8.2483E-121	PREDICTED: uncharacterized protein LOC104243716 [Nicotiana sylvestris]
trEMBL	tr\|A0A068V3V1\|A0A068V3V1_COFCA	1E-119	Coffea canephora DH200=94 genomic scaffold, scaffold_87 {ECO:0000313\|EMBL:CDP14558.1}
TAIR10	AT4G35040.1	2E-76	Basic-leucine zipper (bZIP) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	17908399	17909980	-
GWHAAZE00000005	mRNA	17908399	17909980	-
GWHAAZE00000005	exon	17909715	17909980	-
GWHAAZE00000005	exon	17908399	17909034	-
GWHAAZE00000005	five_prime_UTR	17909715	17909980	-
GWHAAZE00000005	five_prime_UTR	17909020	17909034	-
GWHAAZE00000005	CDS	17908399	17909019	-

Transcript Sequence
>GWHTAAZE018341 ACTTTTACCCTCTGTGTTTGGAATCTCTCTCTGAACAACTCTACTTCGTCCATTTTCTCTCCGCCATTAAAATACAGCCATGTATCTTAATCTCCTCTCTTTTTAACATTTTCCTCCTTCTTGATGAACCACTGGTGGTCCCTCTTCAATCTTAATTTCTAGGGTTTTCTATTTTCGAATCATTCTTTCATCGTCTTTCACCCTCGGCATTCATTCGGCTCGGCTTTGAATCAATTGCTTCCTTCTAGCGCTAGGGTTTCCTCTGGTTAAGTAGATTCCTCATGGTGATGGATGACGGAGAGCTTGATTTCTCAAGCCACGAAATGTTTGCCAATTCAAATATTGGAGCTGTCCCTAGCAGTTCCATGGATAGCTTCTTCGAGGAACTTCTAAAGGATACACATGCGTGTACTCATACCCATACTTGCAACCCACCAGGACCCGATTTCTCCCATACGCACACTTGTTATCATGTGCACACCAAGATTGTACCTTCCTCGAGTGGAGATGATAAGGCTCCCACCGATGACACTGCAGAGTCGGCAGAAAAGAAAGCAAAAAAGCGCCCAACAGGAAATAGGGAAGCGGTGCGAAAGTACAGGGAGAAGAAGAAAGCTCGGACGGCTTCGTTAGAAGACGAGGTTGTTAGATTGAGAGCTGTGAATCAGCAGCTAATGAAGAGGCTGCAGGGCCAAGCTGTTCTGGAAGCCGAGGTGGGGAGGCTTAAGTGTTTGCTTGTGGATATTAGAGGAAGGATTGAAGGGGAGATTGGATCTTTTCCTTACCAAAAGTCGGCTAAGAGTGGAAACATTTATCAGAATCTTGCTAACCCTAATATGCAGAGTGCATATGTGATGAATCCGTGTAACATGCAGTGTGATGATCAGGTTTATTGCCTTCAT

Network for GWHGAAZE018319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07716.16	bZIP_2	89	141	3.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.091
	SRR3591706	second leaf	21.709
	SRR3591707	mature leaf	20.518
	SRR3591708	Shoot apex	22.153
	SRR3591709	Stem	34.330
	SRR3591710	White floral bud	22.003
	SRR3591711	White flower	31.639
	SRR3591712	Green floral bud	20.867
	SRR3591713	Yellow flower	33.939
SRP173429	SRR8316895	Juvenile bud stage	9.851
	SRR8316896	Juvenile bud stage	12.537
	SRR8316897	Juvenile bud stage	6.011
	SRR8316894	Third green stage	7.416
	SRR8316900	Third green stage	18.229
	SRR8316901	Third green stage	17.093
	SRR8316898	Complete white stage	9.344
	SRR8316899	Complete white stage	23.695
	SRR8316903	Complete white stage	14.111
	SRR8316902	Silver flowering stage	7.559
	SRR8316904	Silver flowering stage	9.191
	SRR8316905	Silver flowering stage	4.665
	SRR8316906	Gold flowering stage	9.838
	SRR8316907	Gold flowering stage	13.240
	SRR8316908	Gold flowering stage	14.455
SRP132670	SRR6706286	Control	23.514
	SRR6706287	Light intensity 50%	26.037
	SRR6706288	Light intensity 20%	25.019
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.509
	CNS0095593	Slightly white alabastrum(diploid) 2	8.370
	CNS0095594	Slightly white alabastrum(diploid) 3	8.151
	CNS0095595	Whole white alabastrum(diploid) 2	9.572
	CNS0095596	Whole white alabastrum(diploid) 3	7.753
	CNS0095597	Whole white alabastrum(diploid) 4	8.266
	CNS0095598	Silvery flower (diploied) 1	12.601
	CNS0095599	Silvery flower (diploied) 2	10.408
	CNS0095600	Silvery flower (diploied) 3	12.224
	CNS0095601	Golden flower (diploid) 1	7.242
	CNS0095602	Golden flower (diploid) 2	12.352
	CNS0095603	Golden flower (diploid) 3	13.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.539
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.913
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.938
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.283
	CNS0095610	Silvery flower (tetraploid) 1	13.010
	CNS0095611	Silvery flower (tetraploid) 2	11.497
	CNS0095612	Silvery flower (tetraploid) 3	7.707
	CNS0095613	Golden flower (tetraploid) 1	7.125
	CNS0095614	Golden flower (tetraploid) 2	12.280
	CNS0095615	Golden flower (tetraploid) 3	7.725
CRA001975	CRR073297	Stem 1	20.799
	CRR073298	Stem 2	14.804
	CRR073299	Stem 3	21.280
	CRR073300	Leaf 1	17.668
	CRR073301	Leaf 2	18.294
	CRR073302	Leaf 3	24.617
	CRR073303	Juvenile bud 1	21.548
	CRR073304	Juvenile bud 2	21.778
	CRR073305	Juvenile bud 3	24.795
	CRR073306	Third green 1	21.280
	CRR073307	Third green 2	18.810
	CRR073308	Third green 3	23.524
	CRR073309	Second white 1	16.079
	CRR073310	Second white 2	16.621
	CRR073311	Second white 3	14.687
	CRR073312	Silver flowering 1	15.386
	CRR073313	Silver flowering 2	17.552
	CRR073314	Silver flowering 3	17.735
	CRR073315	Gold flowering 1	24.827
	CRR073316	Gold flowering 2	34.626
	CRR073317	Gold flowering 3	27.261
	CRR073318	Tawny withering 1	43.662
	CRR073319	Tawny withering 2	33.548
	CRR073320	Tawny withering 3	36.481