Gene detail

Detail information of GWHGAAZE018328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001268129.1	1.0985E-108	flavonoid-related R2R3 MYB 4a repressor transcription factor [Vitis vinifera]
Swissprot	tr\|P81393\|MYB08_ANTMA	2E-90	Myb-related protein 308
trEMBL	tr\|A1E8L7\|A1E8L7_VITVI	4E-109	R2R3 Myb4a C2 repressor motif protein {ECO:0000313\|EMBL:ABL61515.1}
TAIR10	AT4G38620.1	5E-72	myb domain protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18024024	18024872	+
GWHAAZE00000005	mRNA	18024024	18024872	+
GWHAAZE00000005	exon	18024024	18024286	+
GWHAAZE00000005	exon	18024377	18024515	+
GWHAAZE00000005	exon	18024693	18024872	+
GWHAAZE00000005	CDS	18024024	18024286	+
GWHAAZE00000005	CDS	18024377	18024515	+
GWHAAZE00000005	CDS	18024693	18024872	+

Transcript Sequence
>GWHTAAZE018350 ATGGGAAGGTCTCCTTGCTGTGAGAAAGCTCACACAAACAAAGGAGCGTGGACTAAAGAGGAAGATGATCGTCTTATTGCTTATATCCGCTCCCACGGCGAAGGCTGCTGGCGCTCGCTTCCCAAGGCCGCTGGCCTTCTCCGATGTGGCAAGAGTTGCCGTCTCCGTTGGATTAATTACTTAAGGCCAGATCTCAAGCGCGGCAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCATAGCCTCCTTGGAAACAAATGGTCTCTCATAGCTGGAAGATTACCGGGAAGGACAGATAACGAGATAAAGAATTACTGGAACACCCACATAAGAAGAAAGCTTTTGAACAGGGGGATTGATCCGGCCACTCACCGTTCCATCAACGAGCCTGCACAACCTGAGCCATTGAAGACTGGAGGGAGGAATGACAGTCCTTGTTTCTCTTGCAACTTGGGAATACAAAACAGCAAGGAGTGTAGTTGTAGCACTAATGGCACTGGAAGCAGCAATCCTGGTTATAATTTTTTAGGACTGAAAACTGGTATTTTGGACTACAGAAGCCTAGAGATGAAATGA

Network for GWHGAAZE018328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	2.50E-14
PF00249.32	Myb_DNA-binding	67	111	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.329
	SRR3591706	second leaf	44.612
	SRR3591707	mature leaf	19.335
	SRR3591708	Shoot apex	70.426
	SRR3591709	Stem	89.754
	SRR3591710	White floral bud	247.526
	SRR3591711	White flower	104.166
	SRR3591712	Green floral bud	57.582
	SRR3591713	Yellow flower	74.684
SRP173429	SRR8316895	Juvenile bud stage	16.984
	SRR8316896	Juvenile bud stage	46.870
	SRR8316897	Juvenile bud stage	7.685
	SRR8316894	Third green stage	15.641
	SRR8316900	Third green stage	55.897
	SRR8316901	Third green stage	50.610
	SRR8316898	Complete white stage	146.868
	SRR8316899	Complete white stage	73.190
	SRR8316903	Complete white stage	209.120
	SRR8316902	Silver flowering stage	74.810
	SRR8316904	Silver flowering stage	86.378
	SRR8316905	Silver flowering stage	52.728
	SRR8316906	Gold flowering stage	133.761
	SRR8316907	Gold flowering stage	152.196
	SRR8316908	Gold flowering stage	120.740
SRP132670	SRR6706286	Control	62.228
	SRR6706287	Light intensity 50%	60.773
	SRR6706288	Light intensity 20%	55.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.308
	CNS0095593	Slightly white alabastrum(diploid) 2	32.098
	CNS0095594	Slightly white alabastrum(diploid) 3	18.226
	CNS0095595	Whole white alabastrum(diploid) 2	31.822
	CNS0095596	Whole white alabastrum(diploid) 3	31.612
	CNS0095597	Whole white alabastrum(diploid) 4	24.607
	CNS0095598	Silvery flower (diploied) 1	49.710
	CNS0095599	Silvery flower (diploied) 2	84.907
	CNS0095600	Silvery flower (diploied) 3	134.721
	CNS0095601	Golden flower (diploid) 1	80.442
	CNS0095602	Golden flower (diploid) 2	82.523
	CNS0095603	Golden flower (diploid) 3	85.415
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.744
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.142
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.441
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.417
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.985
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.389
	CNS0095610	Silvery flower (tetraploid) 1	66.506
	CNS0095611	Silvery flower (tetraploid) 2	128.724
	CNS0095612	Silvery flower (tetraploid) 3	304.678
	CNS0095613	Golden flower (tetraploid) 1	119.267
	CNS0095614	Golden flower (tetraploid) 2	87.959
	CNS0095615	Golden flower (tetraploid) 3	82.998
CRA001975	CRR073297	Stem 1	63.303
	CRR073298	Stem 2	66.403
	CRR073299	Stem 3	64.660
	CRR073300	Leaf 1	91.622
	CRR073301	Leaf 2	107.324
	CRR073302	Leaf 3	100.450
	CRR073303	Juvenile bud 1	102.355
	CRR073304	Juvenile bud 2	70.754
	CRR073305	Juvenile bud 3	119.015
	CRR073306	Third green 1	340.426
	CRR073307	Third green 2	301.137
	CRR073308	Third green 3	300.945
	CRR073309	Second white 1	185.391
	CRR073310	Second white 2	175.363
	CRR073311	Second white 3	122.649
	CRR073312	Silver flowering 1	56.368
	CRR073313	Silver flowering 2	45.532
	CRR073314	Silver flowering 3	67.417
	CRR073315	Gold flowering 1	53.617
	CRR073316	Gold flowering 2	43.890
	CRR073317	Gold flowering 3	45.793
	CRR073318	Tawny withering 1	45.584
	CRR073319	Tawny withering 2	34.600
	CRR073320	Tawny withering 3	57.676