Gene detail

Detail information of GWHGAAZE018339

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007041880.1	Glycosyl hydrolase family 10 protein isoform 1 [Theobroma cacao]
trEMBL	tr\|A0A061E086\|A0A061E086_THECC	Glycosyl hydrolase family 10 protein isoform 1 {ECO:0000313\|EMBL:EOX97711.1}
TAIR10	AT4G38650.1	Glycosyl hydrolase family 10 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18209822	18213160	+
GWHAAZE00000005	mRNA	18209822	18213160	+
GWHAAZE00000005	exon	18209822	18209883	+
GWHAAZE00000005	exon	18210159	18210245	+
GWHAAZE00000005	exon	18210329	18210362	+
GWHAAZE00000005	exon	18210549	18210708	+
GWHAAZE00000005	exon	18210908	18211080	+
GWHAAZE00000005	exon	18211297	18211398	+
GWHAAZE00000005	exon	18211646	18211792	+
GWHAAZE00000005	exon	18212104	18212742	+
GWHAAZE00000005	exon	18212825	18213160	+
GWHAAZE00000005	CDS	18209822	18209883	+
GWHAAZE00000005	CDS	18210159	18210245	+
GWHAAZE00000005	CDS	18210329	18210362	+
GWHAAZE00000005	CDS	18210549	18210708	+
GWHAAZE00000005	CDS	18210908	18211080	+
GWHAAZE00000005	CDS	18211297	18211398	+
GWHAAZE00000005	CDS	18211646	18211792	+
GWHAAZE00000005	CDS	18212104	18212742	+
GWHAAZE00000005	CDS	18212825	18213160	+

Transcript Sequence
>GWHTAAZE018361 ATGCATGTGAGCAGTCACGGAGGTGATCAGACTTTGTACTTAGTAATACTACTATTGCCCTCATCATTAATTAAGGGTCATGAAAGTTCCCTCCTCTATTTGTCTCTTCATTCTCTTCTTCATTGCTCCAACCTTGGCTTCCTCTTCAGATGGGCCACTATACGATCATTCTGCTTACACGAGTGTAAATTGCAACCGGAGAAGCCACTTTACAATGGAGGGGTCCTCAAAGATTTGGCTCCGGATTCCCAGTGGATCCTTGGGGGAAACAAACGAAGCACATTTCATACCCCTGCTTTTGTCTTGCAAAATCTCCCCCAAGGCACCATTTACTCTTTCTCCAGTTGGGTAAAGATAGGAGGCACAAATTCAGCTCTCGTGAGGGCAAGCCTGATGACAGAAGAATCAACACACAACTGCATTGGGTCTGTTTTAGCGAAGCGTGGATGCTGGTCATTCCTTAAGGGTGGATTTGTGTTAAGCTCACCATCAAATTTATCCGTTCTATTCTTCCAGAATTCAGATGAAGGAGACATCGATATAGCAATCGATAGTGCTTCTTTACAGCCGTTTACTGAAGAGCAGTGGAGATTAAGTCAACAGCACAAAATTAACAGGGAAAGAAAGCGTGCCACGACAATTCATATTTCAAATAAAGAAGGAGGTCGTTTGGCTGGAGCAACCGTTACAGTTGAGCAAATTTCAAAAGATTTCCCATTCGGGTCTGCTATAGCAAAAAGCATTCTCGGAAATTCACCCTATCAGAATTGGTTTGTTAAGCGATTCAACGCAGCAGTGTTTGAGAATGAACTTAAGTGGTACGCAACAGAGCCCAAACCAGGCCAAATCAACTACACCTTAGCCGACCAGATGCTAGAATTCGTTCGAGCCAACCAAATCATCACCAGAGGCCATAATATCTTCTGGGAGGATCCTAGGTACACCCCATCATGGGTTAAAAATCTAACGGGTCCTGATCTTCATTCAGCTGTCAACTCAAGAATACAGAGTTTGATGAGCAGATACAAGGAGGAATTCATACATTGGGACGTCAGCAACGAAATACTTCACTACGACTTCTATGAGCAAAGGCTTGGCTCTAACGCGACCTTGCATTTCTATGAGATGGCACATCAAGCAGACCCTTTAGCAACGCTTTTCTTGAATGAATATAATGTGGTGGAGACTTGTAGTGACGTTAATTCCACCGTGGACACGTACATTTTGAAGATAAAAGAGCTGAGACGTGGTGGTGTGTCCATGGATGGAATTGGGCTAGAAGGTCATTTTACAGTACCAAATCTTCCTCTAATTAGAGGTATACTCGACAAGCTGGCCACGCTAGAGCTACCAATTTGGCTTACGGAGGTTGATATTAGCAATAAACTTGATAAGGAAACACAGGGAATTTATTTAGAGCAAGTTTTGAGAGAAGGCTTTTCGCATCCTGCTGTGAATGGGATAATGCTTTGGAGCGCACTGGATCCAAAAGGGTGTTACCAAATGTGCCTGACAGACAGTGACTTTAATAATCTCCCTGCTGGCGACGTTGTTGATAAGGTCTTGAAAGAATGGGAAACTGGGGTTATAAATGGTCAATCGGATGAATATGGTTCGTATAGCTTCTTTGGGTTCTTAGGGGAGTACAAGGTGACTGTTGAGTATAAAGATAAAACTGTGAATTCGACATTTTCACTATGTCGAAGTGATGAAACTAGGCATTTAAACATTCAACTGTAA

Network for GWHGAAZE018339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0222

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00331.21	Glyco_hydro_10	233	497	1.70E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.626
	SRR3591706	second leaf	7.638
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	6.920
	SRR3591709	Stem	0.019
	SRR3591710	White floral bud	0.372
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.170
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	7.303
	SRR8316896	Juvenile bud stage	7.673
	SRR8316897	Juvenile bud stage	4.085
	SRR8316894	Third green stage	4.121
	SRR8316900	Third green stage	3.582
	SRR8316901	Third green stage	4.792
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.472
	SRR8316903	Complete white stage	0.146
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.113
	SRR6706287	Light intensity 50%	3.470
	SRR6706288	Light intensity 20%	4.195
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.379
	CNS0095593	Slightly white alabastrum(diploid) 2	11.787
	CNS0095594	Slightly white alabastrum(diploid) 3	9.879
	CNS0095595	Whole white alabastrum(diploid) 2	2.279
	CNS0095596	Whole white alabastrum(diploid) 3	4.641
	CNS0095597	Whole white alabastrum(diploid) 4	1.324
	CNS0095598	Silvery flower (diploied) 1	0.340
	CNS0095599	Silvery flower (diploied) 2	0.617
	CNS0095600	Silvery flower (diploied) 3	0.311
	CNS0095601	Golden flower (diploid) 1	0.555
	CNS0095602	Golden flower (diploid) 2	0.247
	CNS0095603	Golden flower (diploid) 3	0.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.266
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.627
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.821
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.041
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.625
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.263
	CNS0095610	Silvery flower (tetraploid) 1	0.044
	CNS0095611	Silvery flower (tetraploid) 2	0.183
	CNS0095612	Silvery flower (tetraploid) 3	0.089
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	9.337
	CRR073298	Stem 2	10.653
	CRR073299	Stem 3	14.450
	CRR073300	Leaf 1	7.741
	CRR073301	Leaf 2	7.953
	CRR073302	Leaf 3	9.343
	CRR073303	Juvenile bud 1	2.115
	CRR073304	Juvenile bud 2	1.233
	CRR073305	Juvenile bud 3	2.353
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.292
	CRR073316	Gold flowering 2	0.195
	CRR073317	Gold flowering 3	0.656
	CRR073318	Tawny withering 1	0.297
	CRR073319	Tawny withering 2	0.225
	CRR073320	Tawny withering 3	0.024