Detail information of GWHGAAZE018343


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW64113.12.6248E-62hypothetical protein EUGRSUZ_G01769 [Eucalyptus grandis]
Swissprottr|Q8L883|LAX5_MEDTR2E-58Auxin transporter-like protein 5
trEMBLtr|A0A059BDB5|A0A059BDB5_EUCGR1E-62Uncharacterized protein {ECO:0000313|EMBL:KCW64113.1}
TAIR10AT1G77690.13E-42like AUX1 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1826458418265076+
GWHAAZE00000005mRNA1826458418265076+
GWHAAZE00000005exon1826458418264787+
GWHAAZE00000005exon1826486418265076+
GWHAAZE00000005CDS1826458418264787+
GWHAAZE00000005CDS1826486418265076+
Transcript Sequence

Network for GWHGAAZE018343

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans611286.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13946AUX1, LAX Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.891
SRR3591706second leaf4.757
SRR3591707mature leaf0.191
SRR3591708Shoot apex23.375
SRR3591709Stem17.514
SRR3591710White floral bud0.761
SRR3591711White flower1.569
SRR3591712Green floral bud0.850
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 6.277
SRR8316896Juvenile bud stage 5.663
SRR8316897Juvenile bud stage 2.253
SRR8316894Third green stage 0.580
SRR8316900Third green stage 0.201
SRR8316901Third green stage 0.188
SRR8316898Complete white stage 0.309
SRR8316899Complete white stage 0.611
SRR8316903Complete white stage 0.489
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.328
SRR6706287Light intensity 50%0.684
SRR6706288Light intensity 20%0.454
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.869
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.611
CNS0095595Whole white alabastrum(diploid) 21.640
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 11.113
CNS0095599Silvery flower (diploied) 20.207
CNS0095600Silvery flower (diploied) 30.152
CNS0095601Golden flower (diploid) 11.527
CNS0095602Golden flower (diploid) 20.403
CNS0095603Golden flower (diploid) 30.470
CNS0095604Slightly white alabastrum(tetraploid) 10.798
CNS0095605Slightly white alabastrum(tetraploid) 20.724
CNS0095606Slightly white alabastrum(tetraploid) 36.745
CNS0095607Whole white alabastrum(tetraploid) 10.188
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.520
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.377
CNS0095612Silvery flower (tetraploid) 30.156
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 15.018
CRR073298Stem 22.963
CRR073299Stem 312.098
CRR073300Leaf 10.026
CRR073301Leaf 20.189
CRR073302Leaf 30.501
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.135
CRR073305Juvenile bud 30.012
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.253
CRR073316Gold flowering 20.028
CRR073317Gold flowering 30.383
CRR073318Tawny withering 15.878
CRR073319Tawny withering 23.756
CRR073320Tawny withering 314.222