Detail information of GWHGAAZE018354


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004231009.20PREDICTED: uncharacterized protein LOC101257218 [Solanum lycopersicum]
Swissprottr|B6U151|GATA_MAIZE1E-25Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor)
trEMBLtr|F6I124|F6I124_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60640.1}
TAIR10AT4G34880.15E-136Amidase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1836060118367250-
GWHAAZE00000005mRNA1836060118367250-
GWHAAZE00000005exon1836669018367250-
GWHAAZE00000005exon1836552218365736-
GWHAAZE00000005exon1836511918365358-
GWHAAZE00000005exon1836479718364995-
GWHAAZE00000005exon1836433518364712-
GWHAAZE00000005exon1836188918361970-
GWHAAZE00000005exon1836157118361761-
GWHAAZE00000005exon1836121318361421-
GWHAAZE00000005exon1836094518361048-
GWHAAZE00000005exon1836083218360866-
GWHAAZE00000005exon1836060118360708-
GWHAAZE00000005CDS1836669018367250-
GWHAAZE00000005CDS1836552218365736-
GWHAAZE00000005CDS1836511918365358-
GWHAAZE00000005CDS1836479718364995-
GWHAAZE00000005CDS1836433518364712-
GWHAAZE00000005CDS1836188918361970-
GWHAAZE00000005CDS1836157118361761-
GWHAAZE00000005CDS1836121318361421-
GWHAAZE00000005CDS1836094518361048-
GWHAAZE00000005CDS1836083218360866-
GWHAAZE00000005CDS1836060118360708-
Transcript Sequence

Network for GWHGAAZE018354

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01425.22Amidase614632.10E-67
PF01425.22Amidase5736945.50E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01426E3.5.1.4, amiE Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Arginine and proline metabolismmap00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.978
SRR3591706second leaf5.323
SRR3591707mature leaf3.994
SRR3591708Shoot apex14.549
SRR3591709Stem10.411
SRR3591710White floral bud8.431
SRR3591711White flower6.190
SRR3591712Green floral bud13.187
SRR3591713Yellow flower1.812
SRP173429 SRR8316895Juvenile bud stage 7.219
SRR8316896Juvenile bud stage 9.304
SRR8316897Juvenile bud stage 4.049
SRR8316894Third green stage 4.090
SRR8316900Third green stage 11.818
SRR8316901Third green stage 11.069
SRR8316898Complete white stage 2.216
SRR8316899Complete white stage 11.964
SRR8316903Complete white stage 3.559
SRR8316902Silver flowering stage1.392
SRR8316904Silver flowering stage2.276
SRR8316905Silver flowering stage1.360
SRR8316906Gold flowering stage 2.784
SRR8316907Gold flowering stage 2.763
SRR8316908Gold flowering stage 4.056
SRP132670SRR6706286Control10.681
SRR6706287Light intensity 50%10.882
SRR6706288Light intensity 20%10.298
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.429
CNS0095593Slightly white alabastrum(diploid) 29.941
CNS0095594Slightly white alabastrum(diploid) 310.194
CNS0095595Whole white alabastrum(diploid) 29.033
CNS0095596Whole white alabastrum(diploid) 311.160
CNS0095597Whole white alabastrum(diploid) 48.813
CNS0095598Silvery flower (diploied) 19.755
CNS0095599Silvery flower (diploied) 28.612
CNS0095600Silvery flower (diploied) 34.092
CNS0095601Golden flower (diploid) 16.261
CNS0095602Golden flower (diploid) 25.724
CNS0095603Golden flower (diploid) 35.673
CNS0095604Slightly white alabastrum(tetraploid) 110.243
CNS0095605Slightly white alabastrum(tetraploid) 210.456
CNS0095606Slightly white alabastrum(tetraploid) 317.959
CNS0095607Whole white alabastrum(tetraploid) 17.518
CNS0095608Whole white alabastrum(tetraploid) 25.940
CNS0095609Whole white alabastrum(tetraploid) 314.467
CNS0095610Silvery flower (tetraploid) 17.315
CNS0095611Silvery flower (tetraploid) 210.716
CNS0095612Silvery flower (tetraploid) 35.618
CNS0095613Golden flower (tetraploid) 12.879
CNS0095614Golden flower (tetraploid) 26.016
CNS0095615Golden flower (tetraploid) 31.855
CRA001975CRR073297Stem 19.695
CRR073298Stem 28.888
CRR073299Stem 310.376
CRR073300Leaf 19.683
CRR073301Leaf 28.909
CRR073302Leaf 310.630
CRR073303Juvenile bud 19.058
CRR073304Juvenile bud 29.591
CRR073305Juvenile bud 38.309
CRR073306Third green 13.327
CRR073307Third green 23.269
CRR073308Third green 33.591
CRR073309Second white 11.773
CRR073310Second white 20.804
CRR073311Second white 30.119
CRR073312Silver flowering 10.228
CRR073313Silver flowering 20.193
CRR073314Silver flowering 30.368
CRR073315Gold flowering 11.171
CRR073316Gold flowering 22.084
CRR073317Gold flowering 30.962
CRR073318Tawny withering 15.959
CRR073319Tawny withering 24.878
CRR073320Tawny withering 37.361