Detail information of GWHGAAZE018358


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO96944.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TLX5|A0A068TLX5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO96944.1}
TAIR10AT4G38760.10Protein of unknown function (DUF3414)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1841246218440217-
GWHAAZE00000005mRNA1841246218440217-
GWHAAZE00000005exon1844007718440217-
GWHAAZE00000005exon1843981118439984-
GWHAAZE00000005exon1843916318439258-
GWHAAZE00000005exon1843780518437874-
GWHAAZE00000005exon1843673218436865-
GWHAAZE00000005exon1843363418433774-
GWHAAZE00000005exon1843339818433555-
GWHAAZE00000005exon1843216118432232-
GWHAAZE00000005exon1843174918431917-
GWHAAZE00000005exon1843155418431652-
GWHAAZE00000005exon1843137718431454-
GWHAAZE00000005exon1843123318431292-
GWHAAZE00000005exon1843098218431139-
GWHAAZE00000005exon1843053718430738-
GWHAAZE00000005exon1842915818429277-
GWHAAZE00000005exon1842829118428367-
GWHAAZE00000005exon1842808418428194-
GWHAAZE00000005exon1842627518426324-
GWHAAZE00000005exon1842456818424716-
GWHAAZE00000005exon1842270118422844-
GWHAAZE00000005exon1842250818422615-
GWHAAZE00000005exon1842062718420737-
GWHAAZE00000005exon1841915018419257-
GWHAAZE00000005exon1841893418419044-
GWHAAZE00000005exon1841773718417894-
GWHAAZE00000005exon1841719818417657-
GWHAAZE00000005exon1841655218416659-
GWHAAZE00000005exon1841625718416315-
GWHAAZE00000005exon1841520118415501-
GWHAAZE00000005exon1841310118414645-
GWHAAZE00000005exon1841267018412877-
GWHAAZE00000005exon1841246218412562-
GWHAAZE00000005CDS1844007718440217-
GWHAAZE00000005CDS1843981118439984-
GWHAAZE00000005CDS1843916318439258-
GWHAAZE00000005CDS1843780518437874-
GWHAAZE00000005CDS1843673218436865-
GWHAAZE00000005CDS1843363418433774-
GWHAAZE00000005CDS1843339818433555-
GWHAAZE00000005CDS1843216118432232-
GWHAAZE00000005CDS1843174918431917-
GWHAAZE00000005CDS1843155418431652-
GWHAAZE00000005CDS1843137718431454-
GWHAAZE00000005CDS1843123318431292-
GWHAAZE00000005CDS1843098218431139-
GWHAAZE00000005CDS1843053718430738-
GWHAAZE00000005CDS1842915818429277-
GWHAAZE00000005CDS1842829118428367-
GWHAAZE00000005CDS1842808418428194-
GWHAAZE00000005CDS1842627518426324-
GWHAAZE00000005CDS1842456818424716-
GWHAAZE00000005CDS1842270118422844-
GWHAAZE00000005CDS1842250818422615-
GWHAAZE00000005CDS1842062718420737-
GWHAAZE00000005CDS1841915018419257-
GWHAAZE00000005CDS1841893418419044-
GWHAAZE00000005CDS1841773718417894-
GWHAAZE00000005CDS1841719818417657-
GWHAAZE00000005CDS1841655218416659-
GWHAAZE00000005CDS1841625718416315-
GWHAAZE00000005CDS1841520118415501-
GWHAAZE00000005CDS1841310118414645-
GWHAAZE00000005CDS1841267018412877-
GWHAAZE00000005CDS1841246218412562-
Transcript Sequence

Network for GWHGAAZE018358

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10487.10Nup188515911.00E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14311NUP188 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0017056molecular_functionstructural constituent of nuclear pore

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.529
SRR3591706second leaf4.318
SRR3591707mature leaf4.289
SRR3591708Shoot apex14.398
SRR3591709Stem5.885
SRR3591710White floral bud5.594
SRR3591711White flower7.552
SRR3591712Green floral bud8.301
SRR3591713Yellow flower3.866
SRP173429 SRR8316895Juvenile bud stage 5.321
SRR8316896Juvenile bud stage 6.277
SRR8316897Juvenile bud stage 2.897
SRR8316894Third green stage 3.048
SRR8316900Third green stage 6.192
SRR8316901Third green stage 5.054
SRR8316898Complete white stage 0.722
SRR8316899Complete white stage 5.852
SRR8316903Complete white stage 1.605
SRR8316902Silver flowering stage0.699
SRR8316904Silver flowering stage1.120
SRR8316905Silver flowering stage0.390
SRR8316906Gold flowering stage 1.227
SRR8316907Gold flowering stage 1.261
SRR8316908Gold flowering stage 2.324
SRP132670SRR6706286Control3.315
SRR6706287Light intensity 50%4.265
SRR6706288Light intensity 20%4.774
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.862
CNS0095593Slightly white alabastrum(diploid) 23.166
CNS0095594Slightly white alabastrum(diploid) 32.486
CNS0095595Whole white alabastrum(diploid) 22.836
CNS0095596Whole white alabastrum(diploid) 31.875
CNS0095597Whole white alabastrum(diploid) 41.909
CNS0095598Silvery flower (diploied) 13.881
CNS0095599Silvery flower (diploied) 23.704
CNS0095600Silvery flower (diploied) 34.124
CNS0095601Golden flower (diploid) 13.948
CNS0095602Golden flower (diploid) 24.189
CNS0095603Golden flower (diploid) 34.429
CNS0095604Slightly white alabastrum(tetraploid) 13.565
CNS0095605Slightly white alabastrum(tetraploid) 22.397
CNS0095606Slightly white alabastrum(tetraploid) 38.896
CNS0095607Whole white alabastrum(tetraploid) 12.183
CNS0095608Whole white alabastrum(tetraploid) 21.160
CNS0095609Whole white alabastrum(tetraploid) 34.442
CNS0095610Silvery flower (tetraploid) 13.358
CNS0095611Silvery flower (tetraploid) 25.277
CNS0095612Silvery flower (tetraploid) 32.048
CNS0095613Golden flower (tetraploid) 10.851
CNS0095614Golden flower (tetraploid) 21.815
CNS0095615Golden flower (tetraploid) 31.155
CRA001975CRR073297Stem 16.639
CRR073298Stem 25.873
CRR073299Stem 34.610
CRR073300Leaf 15.490
CRR073301Leaf 23.675
CRR073302Leaf 33.148
CRR073303Juvenile bud 13.358
CRR073304Juvenile bud 21.552
CRR073305Juvenile bud 35.337
CRR073306Third green 10.070
CRR073307Third green 20.036
CRR073308Third green 30.216
CRR073309Second white 10.423
CRR073310Second white 20.369
CRR073311Second white 30.285
CRR073312Silver flowering 10.309
CRR073313Silver flowering 20.461
CRR073314Silver flowering 30.212
CRR073315Gold flowering 11.940
CRR073316Gold flowering 24.491
CRR073317Gold flowering 32.703
CRR073318Tawny withering 12.845
CRR073319Tawny withering 24.075
CRR073320Tawny withering 33.514