Gene detail

Detail information of GWHGAAZE018381

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO96970.1	8.68492E-44	unnamed protein product [Coffea canephora]
Swissprot	tr\|P32295\|ARG7_VIGRR	2E-33	Indole-3-acetic acid-induced protein ARG7
trEMBL	tr\|A0A068TKX1\|A0A068TKX1_COFCA	3E-44	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO96970.1}
TAIR10	AT4G38840.1	3E-30	SAUR-like auxin-responsive protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18733501	18733791	+
GWHAAZE00000005	mRNA	18733501	18733791	+
GWHAAZE00000005	exon	18733501	18733791	+
GWHAAZE00000005	CDS	18733501	18733791	+

Transcript Sequence
>GWHTAAZE018403 ATGGGTATCCGTATGCCTCGTATTATTCAAGCTAAGCAAGTTCTTCGAAAGTCTTCGTTTATAGCAGCAGCTTCAACAGTGGTAGATGTACCAAAGGGATATTTTGCAGTTTATGTTGGCGAGCAGGAAAAGAAGAGATTTGTAGTTCCAATATCTTTCTTGAAGCAGCCTTCATTCCAAGACTTGTTATGTCAAGCCGAGGAAGTATTTGGGTTTGATCACCCAATGGGTGGTCTCACTATTCCCTGCAGACAAGACATTTTCAATGACATCACATCTCGTTTGAGCTAA

Network for GWHGAAZE018381

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02519.15	Auxin_inducible	19	94	1.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14488	SAUR	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0009733	biological_process	response to auxin

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.801
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.559
	SRR3591711	White flower	0.991
	SRR3591712	Green floral bud	0.656
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.093
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.053
	SRR8316898	Complete white stage	0.032
	SRR8316899	Complete white stage	0.048
	SRR8316903	Complete white stage	0.206
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.362
	SRR8316905	Silver flowering stage	0.115
	SRR8316906	Gold flowering stage	0.361
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.023
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.026
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.076
	CNS0095597	Whole white alabastrum(diploid) 4	0.056
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.021
	CNS0095600	Silvery flower (diploied) 3	0.033
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.034
	CNS0095603	Golden flower (diploid) 3	0.087
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.605
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.249
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.842
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.572
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.978
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.831
	CNS0095610	Silvery flower (tetraploid) 1	1.115
	CNS0095611	Silvery flower (tetraploid) 2	1.402
	CNS0095612	Silvery flower (tetraploid) 3	0.391
	CNS0095613	Golden flower (tetraploid) 1	0.410
	CNS0095614	Golden flower (tetraploid) 2	0.016
	CNS0095615	Golden flower (tetraploid) 3	1.835
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.006
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000