Gene detail

Detail information of GWHGAAZE018392

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006423507.1	1.0472E-158	hypothetical protein CICLE_v10028796mg [Citrus clementina]
Swissprot	tr\|Q9SI62\|POED2_ARATH	1E-135	Polyprenol reductase 2
trEMBL	tr\|V4S8H8\|V4S8H8_9ROSI	4E-159	Uncharacterized protein {ECO:0000313\|EMBL:ESR36747.1}
TAIR10	AT2G16530.1	2E-91	3-oxo-5-alpha-steroid 4-dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18885649	18888873	+
GWHAAZE00000005	mRNA	18885649	18888873	+
GWHAAZE00000005	exon	18885649	18885804	+
GWHAAZE00000005	exon	18886204	18886550	+
GWHAAZE00000005	exon	18887312	18887603	+
GWHAAZE00000005	exon	18888160	18888320	+
GWHAAZE00000005	exon	18888395	18888437	+
GWHAAZE00000005	exon	18888555	18888873	+
GWHAAZE00000005	CDS	18885649	18885804	+
GWHAAZE00000005	CDS	18886204	18886550	+
GWHAAZE00000005	CDS	18887312	18887603	+
GWHAAZE00000005	CDS	18888160	18888320	+
GWHAAZE00000005	CDS	18888395	18888437	+
GWHAAZE00000005	CDS	18888555	18888659	+
GWHAAZE00000005	three_prime_UTR	18888660	18888873	+

Transcript Sequence
>GWHTAAZE018414 ATGGAGCTAGGGATTGTTGTGTTATTGAGAGCCGCATGGACTGCTGGGATTCTTCCTATTATCATTGCTGAGATACCATTCCCTCAATGTAATTCATTTAAAGAAGTTTTATTAGGTTTTGCCAAGAGAGGCAAGATCATGCAATCATCCGCTCATAAATTCACTGTTCCACAAAGACTATTTTCTCATTTTTATGTGGTGGCTGTTGTGTGGACAACACTTCTGGTAGTTGCAACTTGGTTGTATGCGTATAGAACTGCATCATTAATCTCCGAACCGTTGCGTTATTCTACCATCGCCAGCCACTTGACGGGGGGTTCACACATTCTCTCCTTGCATAAATCGCGTTCATCTACAAAACACATATACATTGTTTGGCGATCTTTGTTTCTTCTTTTGTTAATGGAAGCTCAAGTCTTGAGACGCCTTTTCGAGACAATATACGTATTTAAGTACAGTCCATCAGCTAGGATGCACATTTTTGGTTATCTCACTGGCCTATTTTTCTACACGGCAGCTCCACTGTCACTTTGCTGTCCTTTTGCACCTGAGATGTTCAAATTTGCTGCAAATTGGTTGGTTGAATTCATTGTTAAGGGAAAGGATAGGATGCTGGTCTCTGAATATGATATTTGGGCACTTGTAATTCCTCTAATGAGACTTAGATGGTACACATGGATTGGTGCAGCTATATTTTTTTGGGGTTGGATTCATCAGTGTCGGTGTCATGCAATACTTGTAAGTTTCTTGATCAGCCACCATCATTTACTTGATTTTGATTTTAAATTTTTATGGGGCTCATTGCGAGAGAACACAGAACAAGTAGATGACTATTTAATTCCTTACGGTGATTGGTTTAATCACGTTTCATGTCCGCACTACTTGGCTGAGCTTGTAATTCTCTCTCTCTCTCTCTCTCACACACACAGAGGTAGTCTTGATTGTTGTGCCCAGAATGGGGGTGGAGATCTAACCATCTGGTTACTGTTTGCCTTTGTGGTGGCAAATCTTGCATTTGCAGCAGCAGAAACACACAGGTGGTATCTGCGTAAATTCGATAATTACCCTACCAACCGAAATGCCATTATTCCATTTGTTTATTAGTGGTCATCATAGCTGAAATATGTATGTTTGTATACCATGTAATTCAGGAAATTGGTACTTCGGATTTTTAAGATTTTGTATATTCTTTAATCTTCCTTTTTATATTTATTTTATTTGTACTTTCTACACCAAGTTGAGAAACGCGAGTAACATTTTGTTTTGTTACAGCTGATTGTAACGGATCCCTTAATTTTTTATTTCCATCTTAGAAATA

Network for GWHGAAZE018392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02544.17	Steroid_dh	224	367	1.30E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12345	SRD5A3	Steroid hormone biosynthesis	map00140
K12345	SRD5A3	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.961
	SRR3591706	second leaf	6.854
	SRR3591707	mature leaf	4.778
	SRR3591708	Shoot apex	9.980
	SRR3591709	Stem	7.821
	SRR3591710	White floral bud	5.740
	SRR3591711	White flower	3.279
	SRR3591712	Green floral bud	9.177
	SRR3591713	Yellow flower	1.750
SRP173429	SRR8316895	Juvenile bud stage	7.564
	SRR8316896	Juvenile bud stage	9.082
	SRR8316897	Juvenile bud stage	4.098
	SRR8316894	Third green stage	3.406
	SRR8316900	Third green stage	9.378
	SRR8316901	Third green stage	6.781
	SRR8316898	Complete white stage	1.493
	SRR8316899	Complete white stage	12.022
	SRR8316903	Complete white stage	4.296
	SRR8316902	Silver flowering stage	1.889
	SRR8316904	Silver flowering stage	2.575
	SRR8316905	Silver flowering stage	1.170
	SRR8316906	Gold flowering stage	3.198
	SRR8316907	Gold flowering stage	3.751
	SRR8316908	Gold flowering stage	5.125
SRP132670	SRR6706286	Control	8.141
	SRR6706287	Light intensity 50%	6.473
	SRR6706288	Light intensity 20%	8.627
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.937
	CNS0095593	Slightly white alabastrum(diploid) 2	8.274
	CNS0095594	Slightly white alabastrum(diploid) 3	7.636
	CNS0095595	Whole white alabastrum(diploid) 2	6.481
	CNS0095596	Whole white alabastrum(diploid) 3	6.048
	CNS0095597	Whole white alabastrum(diploid) 4	5.669
	CNS0095598	Silvery flower (diploied) 1	7.480
	CNS0095599	Silvery flower (diploied) 2	8.740
	CNS0095600	Silvery flower (diploied) 3	3.865
	CNS0095601	Golden flower (diploid) 1	6.522
	CNS0095602	Golden flower (diploid) 2	5.153
	CNS0095603	Golden flower (diploid) 3	4.869
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.424
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.845
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.944
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.988
	CNS0095610	Silvery flower (tetraploid) 1	3.734
	CNS0095611	Silvery flower (tetraploid) 2	3.120
	CNS0095612	Silvery flower (tetraploid) 3	2.789
	CNS0095613	Golden flower (tetraploid) 1	1.797
	CNS0095614	Golden flower (tetraploid) 2	2.523
	CNS0095615	Golden flower (tetraploid) 3	1.035
CRA001975	CRR073297	Stem 1	7.295
	CRR073298	Stem 2	5.751
	CRR073299	Stem 3	4.877
	CRR073300	Leaf 1	5.719
	CRR073301	Leaf 2	4.482
	CRR073302	Leaf 3	4.330
	CRR073303	Juvenile bud 1	4.401
	CRR073304	Juvenile bud 2	3.777
	CRR073305	Juvenile bud 3	3.929
	CRR073306	Third green 1	0.450
	CRR073307	Third green 2	0.258
	CRR073308	Third green 3	0.561
	CRR073309	Second white 1	1.851
	CRR073310	Second white 2	1.307
	CRR073311	Second white 3	0.316
	CRR073312	Silver flowering 1	0.708
	CRR073313	Silver flowering 2	2.204
	CRR073314	Silver flowering 3	0.868
	CRR073315	Gold flowering 1	4.312
	CRR073316	Gold flowering 2	6.102
	CRR073317	Gold flowering 3	2.854
	CRR073318	Tawny withering 1	7.494
	CRR073319	Tawny withering 2	6.602
	CRR073320	Tawny withering 3	7.419