Gene detail

Detail information of GWHGAAZE018395

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFN26936.1	0	arginine decarboxylase [Camellia sinensis]
Swissprot	tr\|Q43075\|SPE1_PEA	0	Arginine decarboxylase
trEMBL	tr\|I6VG10\|I6VG10_CAMSI	0	Arginine decarboxylase {ECO:0000256\|RuleBase:RU003740}
TAIR10	AT2G16500.1	3E-116	arginine decarboxylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	18939588	18940757	+
GWHAAZE00000005	mRNA	18939588	18940757	+
GWHAAZE00000005	exon	18939588	18940322	+
GWHAAZE00000005	exon	18940353	18940757	+
GWHAAZE00000005	CDS	18939588	18940322	+
GWHAAZE00000005	CDS	18940353	18940757	+

Transcript Sequence
>GWHTAAZE018417 ATGAGGGTTATTGATATTGGCGGTGGCCTTGGAATCGATTACGACGGTTCTAAGTCGCCAGATTCCGATGTTTCGGTCGGTTATGGCCTTCAAGAGTACGCTGCAGCTGTTGTTCAAGCTGTGCGATTTGTTTGCGACCGCAAGTCTGTCAAGCACCCGGTTATTTGCAGCGAGAGTGGTCGAGCAATTGTCTCTCATCACTCAATTTTGATTTTTGAGGCTGTATCTGCCAGCACATATAACGTTCCGCCAATTTCCTCAATCGACCTTCAGTATTTTGTCAAGCGCTTACCTGAGGATGCCTGTGAGGATTATGAGAAGCTTTCTTCTGCAGCAGTTAAAGGTGATTATGATACTTGTTTGCTCTACGCCGATCACCTAAAGCAGAGATGTGTTGAATTATTTAAAGAAGGTTCATTTGAGATCGAACAGCTTGCAGCCGTTGATGGTTTATGTGATTTGGTTTCCAAGGCCATTGGGGCATCTGATCCAGTCCACACATATCATGTCAATCTATCGATTTTTACTTCGATTCCCGATTTCTGGGGTATTGGTCAGCTATTTCCAATCGTTCCAATCCATCGCTTAGATCAAAGGCCGGTAACAAGGGGGATACTGTCGGACTTGACTTGTGACAGTGACGGGAAGATCGACAAGTTCATCGGAGGCGAGTCGAGCCTGCCGCTGCACGATCTGGAAGGCAACGGAGGCTTATCTGGTGGTGGCTCGTACTATGAGGCGCTCGGTGGGGTCCACAACCTGTTTGGAGGCCCTAGCGTTGTGCGCGTGTCGCAGAGCGACGGGCCTCACAGCTTCGCCGTGACACGCGCCGTGCCAGGTCCTTCGTGCGGGGACGTGCTCCGGGTGATGCAGCATGAGCCCGACCTGATGTTCGAGACTCTCAAGCACCGCATCGAGGAGTTTGTCCACGATGATAATGATGGTATGGCCCAAGCGTCACTCGCCGGCGGGCTTGCGCGTTACTTCCACAACATGCCTTATCTGTCTGCGTCGTCATCTTGCTGCCTTACGGCGGCTAACGGAGGGAACCCTTATTACTTCAGTGACGATGATAAGTATGGGACTGTTGTGGAATCTGTGCCTGGAGAGGACGAGCAGTGGTCTTATTGCTGTGCCTGA

Network for GWHGAAZE018395

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02784.17	Orn_Arg_deC_N	1	65	3.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01583	E4.1.1.19	Metabolic pathways	map01100
K01583	E4.1.1.19	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006527	biological_process	arginine catabolic process
GO:0008295	biological_process	spermidine biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0008792	molecular_function	arginine decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	190.461
	SRR3591706	second leaf	77.406
	SRR3591707	mature leaf	39.114
	SRR3591708	Shoot apex	85.998
	SRR3591709	Stem	170.726
	SRR3591710	White floral bud	142.482
	SRR3591711	White flower	206.721
	SRR3591712	Green floral bud	143.673
	SRR3591713	Yellow flower	137.879
SRP173429	SRR8316895	Juvenile bud stage	164.291
	SRR8316896	Juvenile bud stage	191.817
	SRR8316897	Juvenile bud stage	134.850
	SRR8316894	Third green stage	50.632
	SRR8316900	Third green stage	128.025
	SRR8316901	Third green stage	138.051
	SRR8316898	Complete white stage	23.526
	SRR8316899	Complete white stage	152.343
	SRR8316903	Complete white stage	38.016
	SRR8316902	Silver flowering stage	51.306
	SRR8316904	Silver flowering stage	37.808
	SRR8316905	Silver flowering stage	25.512
	SRR8316906	Gold flowering stage	143.532
	SRR8316907	Gold flowering stage	109.789
	SRR8316908	Gold flowering stage	215.873
SRP132670	SRR6706286	Control	101.835
	SRR6706287	Light intensity 50%	120.122
	SRR6706288	Light intensity 20%	108.410
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	337.461
	CNS0095593	Slightly white alabastrum(diploid) 2	384.553
	CNS0095594	Slightly white alabastrum(diploid) 3	359.213
	CNS0095595	Whole white alabastrum(diploid) 2	255.011
	CNS0095596	Whole white alabastrum(diploid) 3	196.025
	CNS0095597	Whole white alabastrum(diploid) 4	224.197
	CNS0095598	Silvery flower (diploied) 1	306.516
	CNS0095599	Silvery flower (diploied) 2	280.902
	CNS0095600	Silvery flower (diploied) 3	112.849
	CNS0095601	Golden flower (diploid) 1	355.048
	CNS0095602	Golden flower (diploid) 2	232.194
	CNS0095603	Golden flower (diploid) 3	218.268
	CNS0095604	Slightly white alabastrum(tetraploid) 1	124.937
	CNS0095605	Slightly white alabastrum(tetraploid) 2	140.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	142.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	115.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	78.061
	CNS0095610	Silvery flower (tetraploid) 1	45.342
	CNS0095611	Silvery flower (tetraploid) 2	27.993
	CNS0095612	Silvery flower (tetraploid) 3	82.387
	CNS0095613	Golden flower (tetraploid) 1	90.447
	CNS0095614	Golden flower (tetraploid) 2	58.159
	CNS0095615	Golden flower (tetraploid) 3	41.304
CRA001975	CRR073297	Stem 1	416.334
	CRR073298	Stem 2	398.920
	CRR073299	Stem 3	502.411
	CRR073300	Leaf 1	464.919
	CRR073301	Leaf 2	601.535
	CRR073302	Leaf 3	501.473
	CRR073303	Juvenile bud 1	592.222
	CRR073304	Juvenile bud 2	538.802
	CRR073305	Juvenile bud 3	825.841
	CRR073306	Third green 1	498.251
	CRR073307	Third green 2	533.812
	CRR073308	Third green 3	539.406
	CRR073309	Second white 1	335.551
	CRR073310	Second white 2	246.599
	CRR073311	Second white 3	215.397
	CRR073312	Silver flowering 1	719.889
	CRR073313	Silver flowering 2	748.776
	CRR073314	Silver flowering 3	597.298
	CRR073315	Gold flowering 1	204.744
	CRR073316	Gold flowering 2	364.243
	CRR073317	Gold flowering 3	445.786
	CRR073318	Tawny withering 1	560.458
	CRR073319	Tawny withering 2	1053.976
	CRR073320	Tawny withering 3	586.671