Detail information of GWHGAAZE018398


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010271471.17.6854E-108PREDICTED: B-box zinc finger protein 19 isoform X1 [Nelumbo nucifera]
Swissprottr|C0SVM5|BBX19_ARATH2E-80B-box zinc finger protein 19 {ECO:0000303|PubMed:19920209}
trEMBLtr|A0A061E6F9|A0A061E6F9_THECC6E-107B-box type zinc finger family protein {ECO:0000313|EMBL:EOX97858.1}
TAIR10AT4G38960.12E-60B-box type zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1900049219003853+
GWHAAZE00000005mRNA1900049219003853+
GWHAAZE00000005exon1900049219000584+
GWHAAZE00000005exon1900296719003063+
GWHAAZE00000005exon1900315819003273+
GWHAAZE00000005exon1900336519003607+
GWHAAZE00000005exon1900372219003853+
GWHAAZE00000005CDS1900049219000584+
GWHAAZE00000005CDS1900296719003063+
GWHAAZE00000005CDS1900315819003273+
GWHAAZE00000005CDS1900336519003607+
GWHAAZE00000005CDS1900372219003853+
Transcript Sequence

Network for GWHGAAZE018398

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00643.25zf-B_box3348.90E-06
PF00643.25zf-B_box52852.50E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyDBB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.622
SRR3591706second leaf54.806
SRR3591707mature leaf93.320
SRR3591708Shoot apex51.642
SRR3591709Stem72.955
SRR3591710White floral bud35.375
SRR3591711White flower52.107
SRR3591712Green floral bud18.932
SRR3591713Yellow flower42.675
SRP173429 SRR8316895Juvenile bud stage 20.021
SRR8316896Juvenile bud stage 26.678
SRR8316897Juvenile bud stage 12.334
SRR8316894Third green stage 8.779
SRR8316900Third green stage 27.646
SRR8316901Third green stage 28.250
SRR8316898Complete white stage 17.061
SRR8316899Complete white stage 51.699
SRR8316903Complete white stage 26.661
SRR8316902Silver flowering stage23.852
SRR8316904Silver flowering stage27.097
SRR8316905Silver flowering stage14.378
SRR8316906Gold flowering stage 53.524
SRR8316907Gold flowering stage 51.049
SRR8316908Gold flowering stage 55.158
SRP132670SRR6706286Control33.009
SRR6706287Light intensity 50%27.362
SRR6706288Light intensity 20%28.909
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.279
CNS0095593Slightly white alabastrum(diploid) 223.574
CNS0095594Slightly white alabastrum(diploid) 320.788
CNS0095595Whole white alabastrum(diploid) 219.113
CNS0095596Whole white alabastrum(diploid) 316.470
CNS0095597Whole white alabastrum(diploid) 414.090
CNS0095598Silvery flower (diploied) 151.726
CNS0095599Silvery flower (diploied) 243.453
CNS0095600Silvery flower (diploied) 338.951
CNS0095601Golden flower (diploid) 156.750
CNS0095602Golden flower (diploid) 239.519
CNS0095603Golden flower (diploid) 343.069
CNS0095604Slightly white alabastrum(tetraploid) 120.990
CNS0095605Slightly white alabastrum(tetraploid) 220.267
CNS0095606Slightly white alabastrum(tetraploid) 335.703
CNS0095607Whole white alabastrum(tetraploid) 121.365
CNS0095608Whole white alabastrum(tetraploid) 212.269
CNS0095609Whole white alabastrum(tetraploid) 316.289
CNS0095610Silvery flower (tetraploid) 142.679
CNS0095611Silvery flower (tetraploid) 235.492
CNS0095612Silvery flower (tetraploid) 38.371
CNS0095613Golden flower (tetraploid) 133.155
CNS0095614Golden flower (tetraploid) 250.041
CNS0095615Golden flower (tetraploid) 325.350
CRA001975CRR073297Stem 115.789
CRR073298Stem 213.839
CRR073299Stem 313.327
CRR073300Leaf 111.689
CRR073301Leaf 212.477
CRR073302Leaf 310.219
CRR073303Juvenile bud 18.023
CRR073304Juvenile bud 210.448
CRR073305Juvenile bud 39.298
CRR073306Third green 122.370
CRR073307Third green 215.309
CRR073308Third green 320.170
CRR073309Second white 112.246
CRR073310Second white 220.599
CRR073311Second white 316.503
CRR073312Silver flowering 18.835
CRR073313Silver flowering 212.916
CRR073314Silver flowering 39.669
CRR073315Gold flowering 16.730
CRR073316Gold flowering 28.175
CRR073317Gold flowering 33.185
CRR073318Tawny withering 19.174
CRR073319Tawny withering 29.527
CRR073320Tawny withering 37.052