Gene detail

Detail information of GWHGAAZE018399

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004230887.1	PREDICTED: fructose-bisphosphate aldolase 1, chloroplastic [Solanum lycopersicum]
Swissprot	tr\|Q944G9\|ALFC2_ARATH	Probable fructose-bisphosphate aldolase 2, chloroplastic (Precursor)
trEMBL	tr\|M0ZU28\|M0ZU28_SOLTU	Fructose-bisphosphate aldolase {ECO:0000256\|RuleBase:RU003994}
TAIR10	AT4G38970.1	fructose-bisphosphate aldolase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19005946	19009239	-
GWHAAZE00000005	mRNA	19005946	19009239	-
GWHAAZE00000005	exon	19005946	19006224	-
GWHAAZE00000005	exon	19006951	19007220	-
GWHAAZE00000005	exon	19007398	19007488	-
GWHAAZE00000005	exon	19007597	19007706	-
GWHAAZE00000005	exon	19007897	19008166	-
GWHAAZE00000005	exon	19009066	19009239	-
GWHAAZE00000005	CDS	19009066	19009239	-
GWHAAZE00000005	CDS	19007897	19008166	-
GWHAAZE00000005	CDS	19007597	19007706	-
GWHAAZE00000005	CDS	19007398	19007488	-
GWHAAZE00000005	CDS	19006951	19007220	-
GWHAAZE00000005	CDS	19005946	19006224	-

Transcript Sequence
>GWHTAAZE018421 ATGGCCTCAGCATCTCTCCTCAAGCCATCACCGGTTCTTGAGAAGTCCGAATGGGTCAAGGGTCAGACCCTTCGCCAGACCTCGGCTGCAACAGTCTCAATGGTCCGGTGCCACCCATCCGCCCTCACCGTGCGCGCTTCTTCTTCTTATGCTGATGAACTTGTCAAGACCGCCAAAACTATAGCATCACCAGGACGTGGGATTTTGGCCATGGACGAGTCAAACGCCACCTGTGGGAAGCGTTTGGCGTCGATCGGGCTAGAGAACACTGAGGCAAACCGTCAAGCTTACCGGACTCTGCTAGTATCAGTACCGGGACTTGGCCAATATATATCTGGTGCCATCCTCTTTGAGGAGACTCTCTACCAGTCAACTGTTGATGGCAAGAAGATGGTTGATGTTCTTGTTGAGCAGAACATTGTCCCCGGTATCAAAGTTGACAAGGGTTTGGTGCCTCTAGCTGGTTCGAACGATGAATCCTGGTGCCAAGGTCTAGATGGGCTTGCTTCACGCTCTGCTGCTTACTACCAACAGGGAGCTCGTTTTGCCAAATGGCGTACTGTTGTGAGCATTCCCAATGGCCCATCTGCCTTGGCTGTGAAGGAAGCTGCTTGGGGACTTGCGCGCTATGCCGCCATCTCTCAAGACAATGGGTTGGTGCCAATAGTGGAGCCAGAGATATTGCTTGATGGTGAACATGGAATAGAGCGGACATTTGAAGTGGCACAAAAAGTTTGGGCTGAAGTGTTCTTTTACCTAGCAGAAAACAATGTAATGTTTGAAGGAATATTGTTGAAGCCAAGCATGGTCACTCCTGGTGCTGAGTGCAAGGACAGGGCCACCCCTCAACAGGTTGCTGATTACACCCTCAGACTCCTCCGCCGGAGAATTCCCCCTGCTGTCCCCGGAATCATGTTTTTGTCTGGTGGACAATCTGAAGTTGAAGCGACCCTGAATTTGAACGCCATGAACCAAGCCCCGAACCCATGGCACGTGTCATTCTCATACGCGAGAGCCCTTCAAAACACATGCTTGAAGACATGGGGAGGACAGCCCGAGAACGTGAAGGTGGCTCAAGAGGCCTTACTCGTTAGAGCCAAGGCCAACTCTCTTGCCCAGCTTGGAAAGTACACCGGTGAGGGTGAATCTGAGGAAGCTAAAAAGGGAATGTTCGTTAAGGGCTATGTGTACTAA

Network for GWHGAAZE018399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00274.20	Glycolytic	53	397	4.20E-159

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01623	ALDO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Fructose and mannose metabolism	map00051
		Carbon fixation in photosynthetic organisms	map00710
		Methane metabolism	map00680
		HIF-1 signaling pathway	map04066

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004332	molecular_function	fructose-bisphosphate aldolase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.006
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	20.586
	SRR8316896	Juvenile bud stage	22.158
	SRR8316897	Juvenile bud stage	0.875
	SRR8316894	Third green stage	6.178
	SRR8316900	Third green stage	6.688
	SRR8316901	Third green stage	9.241
	SRR8316898	Complete white stage	0.372
	SRR8316899	Complete white stage	5.706
	SRR8316903	Complete white stage	2.733
	SRR8316902	Silver flowering stage	0.269
	SRR8316904	Silver flowering stage	0.289
	SRR8316905	Silver flowering stage	0.075
	SRR8316906	Gold flowering stage	0.454
	SRR8316907	Gold flowering stage	1.567
	SRR8316908	Gold flowering stage	0.460
SRP132670	SRR6706286	Control	10.907
	SRR6706287	Light intensity 50%	8.331
	SRR6706288	Light intensity 20%	8.274
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.368
	CNS0095593	Slightly white alabastrum(diploid) 2	6.639
	CNS0095594	Slightly white alabastrum(diploid) 3	9.047
	CNS0095595	Whole white alabastrum(diploid) 2	5.827
	CNS0095596	Whole white alabastrum(diploid) 3	4.906
	CNS0095597	Whole white alabastrum(diploid) 4	4.290
	CNS0095598	Silvery flower (diploied) 1	17.768
	CNS0095599	Silvery flower (diploied) 2	20.762
	CNS0095600	Silvery flower (diploied) 3	4.299
	CNS0095601	Golden flower (diploid) 1	23.996
	CNS0095602	Golden flower (diploid) 2	12.395
	CNS0095603	Golden flower (diploid) 3	9.828
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.358
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.696
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.001
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.487
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.724
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.089
	CNS0095610	Silvery flower (tetraploid) 1	0.049
	CNS0095611	Silvery flower (tetraploid) 2	0.434
	CNS0095612	Silvery flower (tetraploid) 3	0.401
	CNS0095613	Golden flower (tetraploid) 1	0.241
	CNS0095614	Golden flower (tetraploid) 2	0.567
	CNS0095615	Golden flower (tetraploid) 3	0.510
CRA001975	CRR073297	Stem 1	28.699
	CRR073298	Stem 2	17.837
	CRR073299	Stem 3	25.013
	CRR073300	Leaf 1	5.112
	CRR073301	Leaf 2	6.270
	CRR073302	Leaf 3	5.313
	CRR073303	Juvenile bud 1	1.784
	CRR073304	Juvenile bud 2	0.858
	CRR073305	Juvenile bud 3	3.892
	CRR073306	Third green 1	0.502
	CRR073307	Third green 2	0.658
	CRR073308	Third green 3	0.366
	CRR073309	Second white 1	0.580
	CRR073310	Second white 2	0.038
	CRR073311	Second white 3	0.285
	CRR073312	Silver flowering 1	0.662
	CRR073313	Silver flowering 2	0.397
	CRR073314	Silver flowering 3	0.381
	CRR073315	Gold flowering 1	40.861
	CRR073316	Gold flowering 2	38.706
	CRR073317	Gold flowering 3	38.022
	CRR073318	Tawny withering 1	7.553
	CRR073319	Tawny withering 2	9.889
	CRR073320	Tawny withering 3	5.990