Gene detail

Detail information of GWHGAAZE018401

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010313216.1	PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X1 [Solanum lycopersicum]
Swissprot	tr\|Q9SIV5\|C3H19_ARATH	Zinc finger CCCH domain-containing protein 19
trEMBL	tr\|A0A067JUK4\|A0A067JUK4_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP27646.1}
TAIR10	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19034767	19045182	+
GWHAAZE00000005	mRNA	19034767	19045182	+
GWHAAZE00000005	exon	19034767	19035695	+
GWHAAZE00000005	exon	19035817	19035940	+
GWHAAZE00000005	exon	19036757	19036777	+
GWHAAZE00000005	exon	19037274	19038189	+
GWHAAZE00000005	exon	19038285	19038412	+
GWHAAZE00000005	exon	19040463	19040522	+
GWHAAZE00000005	exon	19040602	19040652	+
GWHAAZE00000005	exon	19041859	19041947	+
GWHAAZE00000005	exon	19042980	19043131	+
GWHAAZE00000005	exon	19043210	19045182	+
GWHAAZE00000005	CDS	19034767	19035695	+
GWHAAZE00000005	CDS	19035817	19035940	+
GWHAAZE00000005	CDS	19036757	19036777	+
GWHAAZE00000005	CDS	19037274	19038189	+
GWHAAZE00000005	CDS	19038285	19038412	+
GWHAAZE00000005	CDS	19040463	19040522	+
GWHAAZE00000005	CDS	19040602	19040652	+
GWHAAZE00000005	CDS	19041859	19041947	+
GWHAAZE00000005	CDS	19042980	19043131	+
GWHAAZE00000005	CDS	19043210	19045182	+

Transcript Sequence
>GWHTAAZE018423 ATGGAGGACGAGGAAGATAATTTATCAACACTAAACAACAATTCGTCTCTTCACGAAGTTGAAGACTCAATTATGGAAACCAAATTACCTGAGGGAGAAGAATATCCGAATGGCGAACAGCGCGATTTTGCTCCGAATTTGGATGATTCGAAACTCGAAACCGTTCAGTCACCGATTGTTTTGAAAGAAGAGGAAATTGTGACGGAGGAGAATGAGGTGAAGATGAGGGCGGAGCCGAAATTGGATGATGAAGCGGCGGTCGAGGAGATTCCTTGGGTGGATAAGAAAACTGAGACGGAGGTGGAAGAGGCAAAAGGAGGAGGGGAAGAGATTGCTGTGGAGTTAAGCAATACACATCCTGTTGATGTTTACTCACCTATTGGGGCTGAAATAGAGACGGTGGATATTAAACCGGAGATTGAGCCACCGGCTTTGGTTGAGGCGGAAGCATATAAGGACAATGGAGAACCGTCAATTGTGGTTAATCACGACGGGGTTGATGATGATACGGCTGTAGAGGAGGAGATTCTGGCGGAAGCTAAAATGGATGAGGAGGGGGAGGAGGGAGAGGAGATTTCAGCTGATGCTAAAATGGATGAGGAGGGAGAGGAGGGGGAGAGCGATGAGGAAGAAGGGGGCAAGGGGAGTGGAGATGAGATAGAGGATTTACAGGTTGATGGGGGTGAAGATGAGATAGAAGAAGATGATGCAATTGTGGGTGAGGAGGAAACCCCTTCCTTGGACACTACTGAATTGGAGACAGAAACTGATGCGGCGGAGTCAGTGAAAGTAGGTGGAGGGAGGCGTAAGAGAGGGAGGAATTCTAAAGGGACGGCAAAAGTTCCTGCGACAAGGAAGAAGAAGACGATTGAGGAGGATGTTTGTTTCATTTGTTTTGATGGTGGGGAACTCGTGTTATGTGACCGTAGGGGATGCCCTAAAGCCTATCATCCTTCTTGTGTTAACCGGGACGAGGCATTCTTTCGAGCAAAGGGTCGTTGGAATTGTGGTATCTTTCTCTTTCATCTCTATGTAACTGTCCTATATTTTAGGGTTGGCACCAGTGCAGCATCTGTAGATTTTGACGACAAAGGTAGCTGGGAGTATCTCTTTAAAGATTACTGGATAGAGTTGAAGGAAAAGCTATCCCTATCATCTGATGAAATTGCCCAGGCAAAAAATCCCTCAAAAGGATCTGATACATCAGCTGGAAAACAAGAATCACCCGATGGACAGTTTGATGTTAATGAAGAGGGAGGTTCTGCTTCAGAAAATTCTTCCGAGAGCCTAGAAGAAAGAAAACCTAAAAAAAGAAAGGGTAAGAAACTGTCAAAGTCCCTCGTCAAGGAGCAGGGCATTTCAAGTGAGACAGTAGCAGTTGGTTCTAAAAGGATATCAACGTCTGTGAACACTGAGTGGGCATCAAAAGAGCTTCTTGAATTTGTTATGCACATGCGAAATGGTGACAAAACTGTTTTATCTCAGTTTGACGTACAAGCAATGTTATTGGAATATATAAAAAGAAACAAACTTCGTGATCCTCGCCGTAAAAGTCAAATTATTTGTGATTTTAGGCTTCAAAATCTGTTTGGAAAAGCACGTGTAGGGCATTTTGAAATGTTAAAACTTCTCGAATCTCACTTTCTTATAAAGGAGGATTCTCAGATAGATGATATGCAAGGAAGTGTTGTTGACACTGATGTTAATCTATTAGAGGCTGATGGGAACGCTGAGCTAACAAAGGGCGGTAAAGAAAAAAAACGTAAAATGCGTAAGAAAGGGGATGGGCGAGGACCTCAATCTAACGTTGATGATTATGCAGCCATAGATACCCACAACATAAACTTAATTTACCTACGACGGAAGTTGATGGAGGATTTACTTGAAGATGCTGAAAAGTTCAATGACAAGGTTGTTGGTACTTTCGTGAGAATAAGGATCCCTGCTAATAATCAAAAGCAAGACATCTATAGGCTAGTCCAAGTTGTAGGTACAAGCAAAGCAGACAATCCCTATAAAGTTAGCAAAAGGACAACTGATATCATGCTGGAAATATTAAATCTTGACAAAAATGAGGTCATAACTATTGATTCCATTTCAAATCAGGAGTTTACCGAGGATGAATGCAAGCGCTTACGCCAGAGTATAAAATGCGGACTTATCAATAGACTGACTGTGGGTGACATTCTTGACAAGGCAATGGAAATTCAAGCAGCAAGAGTTAATGATTGGATGGAATCAGAGATAGTGCGACTTAGCCATCTTCGTGATCGAGCAAGTGAAAAGGGTCGTAGGAAGGAATATCCTTTGTTGTTCAAAGAATGTGTGGAGAAATTGCAGCTCCTTAAGACACCTGAGGAGCGTCGCCGCAGACTAGAAGAAATTACAGAGATACGTGCAGACCCAAAAATGGATCCAAGTTACGAGTCTGAAGATAATGGCAGCGAAATGGAAGAGGATACTAAACGAGAAGTGTACACAAGGCCGAGAGGTTCTGCCTTTAGCAGGAGACCAAGGGAACCAATCTCTCCCGGAAGAGGATCAGATCTTTCTCCGAGAGATTCGTGGAGTGGTAATAGGAAAAATTCGGGAAAGAACTGGGAATTAAACAGAAACTTGTCAAATAAAAGTTTATCGATCAAAAGTGAAGATGCTACTCTCAATTTTGAGAGACCTAGTGACACTTCGTATCAAAGGAGGGAGAAAGAGGTACAGCGAGAAAATAATATGGAACCATTTGGATCATATAGCCATTCTGCTGTTAGTTCGGAGGCTTCACTGGAACCTATTTCCGCTCCTGCAGTACCAACTGCAGCCAAGATCAGTGAGACGGATAAAATGTGGCACTACAAAGATCCATCTGCAAAAGTACAAGGTCCATTTTCGATGGTTCAGTTACGGAAGTGGAGCAACACAGGGTACTTCCCAGCTGATCTCAAGATTTGGAGAACCGGAAAGCAAGAAGATGATTCAATTCTTTTGACTGACGCATTGGCTGGAATATTTCCAACAGATACAACAAATTTGAAACCTAACGAGACCTCCTTAAGGCAAGGAAGTGAGGTGCAAGATGGAGGAGAGAGAATGTTGAAAACTCAACCAGACCATAATAGTTCATCAAGGGGGGGCTGGGCTACTCCTTCGGTCGAGGTCCCTAAAGTTTCTTTAGACCCAGTGGGTCCAGATTTAGATAATTCGGCAAACCTTCCATCTCCTACTCCAAAACAAAGTTCAGCAGGTTGGACTGGTGGAGCAATGCAATCACCTACACCAGATAGCGGCCAATTACTTCGTTCTTCGACATCATCTTCAATAATCCCAAGTGCTGCAAGCAAAGAATATAATGTAACGGGGTCTTTGGGTGTTTTGACACCTACATCACTTTTGAATTCAGGCGGGCAGTCTGTTGGTGTTTCTGAAAATAAACCTCCAAGTTCTCACTATGGTTTTAGTGCAGCATCAAATTCTGATCAGCATGTCCCTTCAGGCTCTATAAATTCTCTACAAGCTTCTCAATTAGCTGTGGGTGGTGAATCACACTTGACACATTCATATAGCCATCCGCACCCTGCGCCCGTAACTGCTGCTAACATGGTTCAATCGGTCAATAGCCATAACCCGGGTTTCGGAACTCAAGGTTGGGTTAGCAATCCGGCTCAGAACATGGACCCAAATTCTTCTGTTCATATGCCTGGACAACCAGCGGCTTATGCTCACTGGGGTGGTGGTGTTCCATCTAATGTTCAGAATCCTCCACCAGACCCATGGAGACCTCCACTTCAAAGCAATCAATTGAACATGCAGCCTCAAATGCCACCTAACGTGCCATGGGGAACAATGCCGGGTAATCCAAACATGGGCTGGGGAGGACCGGTACCCGGAAATACAAACATGAATTGGGGGCCAACTGTCCAAGGGCCACCTCCTGGAAATGTAAATCCGGGTTGGGTTGTACCCCCACCTGGTAATCAAGGGTTTGTGCCTGGGAATGTAAATCCGGGTTGGGTTGCACCGCCCAGTAATCAAGCTTGGGTCCCTTCAAGTGGGCCAGCCCCTGGAAATCCAAATCCAGGTTGGGCCCCATCAAATGCGGGACCTAATCTTCAGGCTGGAAACACAAATCAGGGTTGGGTTGCACCGAGTGGGAATGCAGGAGCCAATAGTGTTCAAGGTGGCCCAGTAGCACCTGTGAACCCAAACCAAGGTTGGAGTTCACCAGCTACGAACCGGAGCACGAGGGGAAGTGAACCACACCAACACGGAGATAGATTCTCAGGTCGAAGGGATAAGAATAGGCCTTGGAACAGGCAGTCGTCATTCGGCAGTGGAGGAGGGTCAGGAGGTTCTTCTCGATCTTCTCCCAGAGGGCCGCCAAAAGTGTGCTCGTACTATGAGAATGGTAATTGTAAGAAGGGATCCTCTTGCGATTTTATGCACAATTGA

Network for GWHGAAZE018401

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02201.19	SWIB	475	548	4.70E-16
PF03126.19	Plus-3	613	716	1.50E-25
PF02213.17	GYF	948	987	2.20E-13

Protein Sequence

>GWHPAAZE018412
MEDEEDNLSTLNNNSSLHEVEDSIMETKLPEGEEYPNGEQRDFAPNLDDSKLETVQSPIVLKEEEIVTEENEVKMRAEPKLDDEAAVEEIPWVDKKTETEVEEAKGGGEEIAVELSNTHPVDVYSPIGAEIETVDIKPEIEPPALVEAEAYKDNGEPSIVVNHDGVDDDTAVEEEILAEAKMDEEGEEGEEISADAKMDEEGEEGESDEEEGGKGSGDEIEDLQVDGGEDEIEEDDAIVGEEETPSLDTTELETETDAAESVKVGGGRRKRGRNSKGTAKVPATRKKKTIEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGIFLFHLYVTVLYFRVGTSAASVDFDDKGSWEYLFKDYWIELKEKLSLSSDEIAQAKNPSKGSDTSAGKQESPDGQFDVNEEGGSASENSSESLEERKPKKRKGKKLSKSLVKEQGISSETVAVGSKRISTSVNTEWASKELLEFVMHMRNGDKTVLSQFDVQAMLLEYIKRNKLRDPRRKSQIICDFRLQNLFGKARVGHFEMLKLLESHFLIKEDSQIDDMQGSVVDTDVNLLEADGNAELTKGGKEKKRKMRKKGDGRGPQSNVDDYAAIDTHNINLIYLRRKLMEDLLEDAEKFNDKVVGTFVRIRIPANNQKQDIYRLVQVVGTSKADNPYKVSKRTTDIMLEILNLDKNEVITIDSISNQEFTEDECKRLRQSIKCGLINRLTVGDILDKAMEIQAARVNDWMESEIVRLSHLRDRASEKGRRKEYPLLFKECVEKLQLLKTPEERRRRLEEITEIRADPKMDPSYESEDNGSEMEEDTKREVYTRPRGSAFSRRPREPISPGRGSDLSPRDSWSGNRKNSGKNWELNRNLSNKSLSIKSEDATLNFERPSDTSYQRREKEVQRENNMEPFGSYSHSAVSSEASLEPISAPAVPTAAKISETDKMWHYKDPSAKVQGPFSMVQLRKWSNTGYFPADLKIWRTGKQEDDSILLTDALAGIFPTDTTNLKPNETSLRQGSEVQDGGERMLKTQPDHNSSSRGGWATPSVEVPKVSLDPVGPDLDNSANLPSPTPKQSSAGWTGGAMQSPTPDSGQLLRSSTSSSIIPSAASKEYNVTGSLGVLTPTSLLNSGGQSVGVSENKPPSSHYGFSAASNSDQHVPSGSINSLQASQLAVGGESHLTHSYSHPHPAPVTAANMVQSVNSHNPGFGTQGWVSNPAQNMDPNSSVHMPGQPAAYAHWGGGVPSNVQNPPPDPWRPPLQSNQLNMQPQMPPNVPWGTMPGNPNMGWGGPVPGNTNMNWGPTVQGPPPGNVNPGWVVPPPGNQGFVPGNVNPGWVAPPSNQAWVPSSGPAPGNPNPGWAPSNAGPNLQAGNTNQGWVAPSGNAGANSVQGGPVAPVNPNQGWSSPATNRSTRGSEPHQHGDRFSGRRDKNRPWNRQSSFGSGGGSGGSSRSSPRGPPKVCSYYENGNCKKGSSCDFMHN

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.617
	SRR3591706	second leaf	15.882
	SRR3591707	mature leaf	21.056
	SRR3591708	Shoot apex	21.647
	SRR3591709	Stem	16.942
	SRR3591710	White floral bud	21.918
	SRR3591711	White flower	26.839
	SRR3591712	Green floral bud	17.075
	SRR3591713	Yellow flower	17.615
SRP173429	SRR8316895	Juvenile bud stage	9.398
	SRR8316896	Juvenile bud stage	14.633
	SRR8316897	Juvenile bud stage	5.566
	SRR8316894	Third green stage	6.307
	SRR8316900	Third green stage	12.775
	SRR8316901	Third green stage	13.881
	SRR8316898	Complete white stage	3.346
	SRR8316899	Complete white stage	13.895
	SRR8316903	Complete white stage	11.570
	SRR8316902	Silver flowering stage	6.019
	SRR8316904	Silver flowering stage	9.793
	SRR8316905	Silver flowering stage	4.780
	SRR8316906	Gold flowering stage	13.381
	SRR8316907	Gold flowering stage	13.839
	SRR8316908	Gold flowering stage	16.069
SRP132670	SRR6706286	Control	16.018
	SRR6706287	Light intensity 50%	16.085
	SRR6706288	Light intensity 20%	15.845
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.416
	CNS0095593	Slightly white alabastrum(diploid) 2	10.178
	CNS0095594	Slightly white alabastrum(diploid) 3	9.477
	CNS0095595	Whole white alabastrum(diploid) 2	7.110
	CNS0095596	Whole white alabastrum(diploid) 3	6.979
	CNS0095597	Whole white alabastrum(diploid) 4	7.997
	CNS0095598	Silvery flower (diploied) 1	14.684
	CNS0095599	Silvery flower (diploied) 2	12.031
	CNS0095600	Silvery flower (diploied) 3	18.038
	CNS0095601	Golden flower (diploid) 1	12.574
	CNS0095602	Golden flower (diploid) 2	18.530
	CNS0095603	Golden flower (diploid) 3	17.851
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.085
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.267
	CNS0095610	Silvery flower (tetraploid) 1	20.918
	CNS0095611	Silvery flower (tetraploid) 2	20.270
	CNS0095612	Silvery flower (tetraploid) 3	21.356
	CNS0095613	Golden flower (tetraploid) 1	11.842
	CNS0095614	Golden flower (tetraploid) 2	21.247
	CNS0095615	Golden flower (tetraploid) 3	17.559
CRA001975	CRR073297	Stem 1	18.005
	CRR073298	Stem 2	16.955
	CRR073299	Stem 3	12.733
	CRR073300	Leaf 1	14.267
	CRR073301	Leaf 2	13.545
	CRR073302	Leaf 3	7.610
	CRR073303	Juvenile bud 1	8.112
	CRR073304	Juvenile bud 2	5.991
	CRR073305	Juvenile bud 3	13.577
	CRR073306	Third green 1	4.584
	CRR073307	Third green 2	3.872
	CRR073308	Third green 3	5.241
	CRR073309	Second white 1	4.913
	CRR073310	Second white 2	7.415
	CRR073311	Second white 3	7.148
	CRR073312	Silver flowering 1	5.706
	CRR073313	Silver flowering 2	6.709
	CRR073314	Silver flowering 3	6.681
	CRR073315	Gold flowering 1	8.809
	CRR073316	Gold flowering 2	14.645
	CRR073317	Gold flowering 3	5.603
	CRR073318	Tawny withering 1	13.413
	CRR073319	Tawny withering 2	11.415
	CRR073320	Tawny withering 3	10.589