Gene detail

Detail information of GWHGAAZE018407

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009772265.1	0	PREDICTED: uncharacterized protein LOC104222693 isoform X1 [Nicotiana sylvestris]
trEMBL	tr\|F6I198\|F6I198_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60714.1}
TAIR10	AT2G21370.1	7E-162	xylulose kinase-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19107920	19112112	-
GWHAAZE00000005	mRNA	19107920	19112112	-
GWHAAZE00000005	exon	19111846	19112112	-
GWHAAZE00000005	exon	19110911	19111050	-
GWHAAZE00000005	exon	19110568	19110820	-
GWHAAZE00000005	exon	19110060	19110192	-
GWHAAZE00000005	exon	19109769	19109857	-
GWHAAZE00000005	exon	19109043	19109320	-
GWHAAZE00000005	exon	19108275	19108344	-
GWHAAZE00000005	exon	19107920	19108123	-
GWHAAZE00000005	CDS	19111846	19112112	-
GWHAAZE00000005	CDS	19110911	19111050	-
GWHAAZE00000005	CDS	19110568	19110820	-
GWHAAZE00000005	CDS	19110060	19110192	-
GWHAAZE00000005	CDS	19109769	19109857	-
GWHAAZE00000005	CDS	19109043	19109320	-
GWHAAZE00000005	CDS	19108275	19108344	-
GWHAAZE00000005	CDS	19107920	19108123	-

Transcript Sequence
>GWHTAAZE018429 GTATTTCGTATTGATCTCGATGTGCCAGGACATTACTGTTCGAAAAGGCAGATTCCAAGAAATGTTGATTTATCTAAAGTTGTACATAAACGAAGAACAACAATAATGTTTTCTGGAAACAGTAGAACTAACGCGGAAGTTGATCTTAAAGTTGGTGAACGGCTTTATCTTGGAATGGATTTCGGTACATCTGGAGCTAGGTATGCTCTTATTGACAAGGAAGGAACTAAACTTGCCGAAGGAAAGAGGGAGTACCCTCTATTTATGAGCAAGGAGATAGTAGATTGGGCACGCTCATGGAAAACGACAATTTTCTCTCTTATTGAAGATATTCCAATTAATCTCCGACCCTTTATTGCTTCCATTTCTATAGATGGCACTTCTGCAACAACTATTATTATTGACAGCACAACGGGAAAATTGTTGTCGAGACCTTTCCTTTACAATGAGAGCTGTTCTGATGCTTTACCGATAGTAAAGTCCATTGCACCCTTAAATCACACAGTATGTTCTGGTTCTTCCACCCTTTGCAAGCTTGTCTCGTGGTGGAACTCCAGTGATTCAAGTAAAGAATCTGTAGTGTTGTTGCATCAAGCAGATTGGCTGTTGTGGCTTCTTCATGGAAAGCTTGGAGTTTCTGATTACAATAATGCTTTGAAGGTTGGTTATGATCCTGAACTCGAATCTTATCCACCTTGGCTTCTCTCTCAGCCATATTCACGTGTTTTACCTTCCATCCAAGCTCCAGGATCTTTAATTGGTTTTATGAAAGAGGACATTAGGACACAATTTGGTTTTCCAAAGGATTGTGTTATCTGCACTGGAACCACTGACAGTATAGCTGCATTTCTTGCAGCACATGCTACTCAACCTGGGAAAGCTGTCACATCTTTGGGTTCAACTCTTGCTATAAAACTTCTAAGCACAAAAAGGATTGAAGATGCACGATTTGGAGTGTATAGCCATCGCCTTGATGATAAATGGCTTGTTGGCGGTGCTTCAAATACAGGTGGAGCTGTTCTTAAGAATTTTTTTACGGATGAGCAACTGCAGAAATTAAGTGAGCAGATTAATCCGATGGAAGCATCCCCTCTGGACTACTATCCCTTGGAAGCAGTTGGTGAGAGATTTCCTGTGGCAGACCCAAATATGGTTCCCAGGTTACATCCCCGCCCAGAAAGTGATGTCGAGTACTTGCATGGTATTCTAGAATCCATTGCCCGAATAGAGGCAAAGGGTTATGGATTACTGAAGGAATTAGGTGCAACTCCAGTTGAAGAAGTGTTTACAGCAGGGGGTGGAGCGAAAAATGAGAGGTGGATTAAAATACGTGAGAGGGTACTGGGTTTGCCTGTGAGTCGAGCGCGTCATACAGAGGCTGCCTATGGAGCCGCTTTGCTCGCATTGAGGGGTGTCCAGCAGGAAGCAAACTTT

Network for GWHGAAZE018407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00370.22	FGGY_N	55	284	9.40E-08
PF02782.17	FGGY_C	322	469	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22935	XK1, psk	Metabolic pathways	map01100
K22935	XK1, psk	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.901
	SRR3591706	second leaf	19.589
	SRR3591707	mature leaf	20.132
	SRR3591708	Shoot apex	20.130
	SRR3591709	Stem	8.081
	SRR3591710	White floral bud	2.900
	SRR3591711	White flower	4.306
	SRR3591712	Green floral bud	2.879
	SRR3591713	Yellow flower	2.786
SRP173429	SRR8316895	Juvenile bud stage	3.488
	SRR8316896	Juvenile bud stage	3.608
	SRR8316897	Juvenile bud stage	2.610
	SRR8316894	Third green stage	1.985
	SRR8316900	Third green stage	3.253
	SRR8316901	Third green stage	2.455
	SRR8316898	Complete white stage	1.373
	SRR8316899	Complete white stage	2.091
	SRR8316903	Complete white stage	2.049
	SRR8316902	Silver flowering stage	0.571
	SRR8316904	Silver flowering stage	1.134
	SRR8316905	Silver flowering stage	0.550
	SRR8316906	Gold flowering stage	1.084
	SRR8316907	Gold flowering stage	1.263
	SRR8316908	Gold flowering stage	2.034
SRP132670	SRR6706286	Control	3.270
	SRR6706287	Light intensity 50%	1.840
	SRR6706288	Light intensity 20%	2.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.139
	CNS0095593	Slightly white alabastrum(diploid) 2	3.743
	CNS0095594	Slightly white alabastrum(diploid) 3	4.050
	CNS0095595	Whole white alabastrum(diploid) 2	3.448
	CNS0095596	Whole white alabastrum(diploid) 3	2.990
	CNS0095597	Whole white alabastrum(diploid) 4	2.603
	CNS0095598	Silvery flower (diploied) 1	14.236
	CNS0095599	Silvery flower (diploied) 2	8.763
	CNS0095600	Silvery flower (diploied) 3	2.804
	CNS0095601	Golden flower (diploid) 1	18.726
	CNS0095602	Golden flower (diploid) 2	7.703
	CNS0095603	Golden flower (diploid) 3	8.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.732
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.466
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.826
	CNS0095610	Silvery flower (tetraploid) 1	4.171
	CNS0095611	Silvery flower (tetraploid) 2	6.910
	CNS0095612	Silvery flower (tetraploid) 3	3.243
	CNS0095613	Golden flower (tetraploid) 1	2.462
	CNS0095614	Golden flower (tetraploid) 2	2.581
	CNS0095615	Golden flower (tetraploid) 3	2.054
CRA001975	CRR073297	Stem 1	6.801
	CRR073298	Stem 2	4.656
	CRR073299	Stem 3	3.613
	CRR073300	Leaf 1	2.080
	CRR073301	Leaf 2	2.031
	CRR073302	Leaf 3	1.804
	CRR073303	Juvenile bud 1	1.255
	CRR073304	Juvenile bud 2	0.774
	CRR073305	Juvenile bud 3	0.650
	CRR073306	Third green 1	0.107
	CRR073307	Third green 2	0.206
	CRR073308	Third green 3	0.316
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.126
	CRR073311	Second white 3	0.074
	CRR073312	Silver flowering 1	0.297
	CRR073313	Silver flowering 2	0.011
	CRR073314	Silver flowering 3	0.185
	CRR073315	Gold flowering 1	13.380
	CRR073316	Gold flowering 2	17.802
	CRR073317	Gold flowering 3	7.962
	CRR073318	Tawny withering 1	3.036
	CRR073319	Tawny withering 2	2.459
	CRR073320	Tawny withering 3	3.832