Gene detail

Detail information of GWHGAAZE018411

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002512969.1	coatomer alpha subunit, putative [Ricinus communis]
Swissprot	tr\|Q94A40\|COPA1_ARATH	Coatomer subunit alpha-1
trEMBL	tr\|B9RHB0\|B9RHB0_RICCO	Coatomer subunit alpha {ECO:0000256\|PIRNR:PIRNR003354}
TAIR10	AT1G62020.1	Coatomer, alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19169471	19174070	+
GWHAAZE00000005	mRNA	19169471	19174070	+
GWHAAZE00000005	exon	19169471	19169678	+
GWHAAZE00000005	exon	19170309	19170803	+
GWHAAZE00000005	exon	19171117	19174070	+
GWHAAZE00000005	CDS	19169471	19169678	+
GWHAAZE00000005	CDS	19170309	19170803	+
GWHAAZE00000005	CDS	19171117	19174070	+

Transcript Sequence
>GWHTAAZE018433 ATGTTGACGAAGTTCGAGACGAAGAGTAATAGAGTGAAGGGACTGAGTTTCCACAGTAAGAGACCATGGATCCTTGCCAGTCTTCACAGTGGTGTCATCCAAGTATGGGATTACAGAATGGGGACACTCATCGATAAGTTTGATGAACATGATGGGCCTGTTCGTGGGGTTCATTTTCACAAAACTCAACCGCTATTTGTTTCTGGAGGTGATGATTACAAGATTAAGGTTTGGAACTACAAGTTGCATAGGTGTCTATTTACTCTCCTTGGACACCTTGATTATATCCGTACAGTGCAGTTTCACCACGAGTACCCTTGGATAGTGAGTGCAAGTGATGACCAGACCATCAGAATCTGGAATTGGCAATCCCGCACTTGTATTTCTGTTTTGACCGGCCACAATCATTATGTAATGTGCGCTTCGTTCCACCCTAAGGAAGACCTTGTCGTGTCAGCATCACTGGATCAGACAGTTCGTGTCTGGGATATTGGTGCCCTGAGGAAGAAAACGGTGTCCCCTGCTGATGACCTTTTGCGTTTAAGCCAGATGAATACAGATCTTTTTGGTGGGATTGATGCTGTTGTCAAGTATGTTCTGGAAGGTCATGACCGGGGAGTGAACTGGGCTTCCTTTCATCCGACCTTACCTTTAATTGTCTCAGGAGCTGATGATCGTCAAGTGAAGTTGTGGCGAATGAATGACTCGAAGGCTTGGGAAGTGGACACCTTGAGAGGTCACATGAATAATGTGTCATGTGTCATGTTTCACGCCAAACAGGATATGATTGTTTCTAACTCAGAGGACAAAAGTATTCGTGTTTGGGATGTAACAAAGCGGACTGGTGTTCAAACTTTCCGTCGAGAACATGATAGATTTTGGATTCTTGCATCTCACCCCGAGATGAATCTCCTTGCTGCTGGTCATGATAGCGGCATGATCGTTTTTAAGTTGGAGAGAGAAAGACCTGCATTCTCTGTAAGCGGCGATTCCATGTTCTATGCAAAGGATCGATTTTTACGGTTCTATGAATTTTCAACTCAAAAAGACACACAAGTGATTCCAATTAGACGCCCTGGCTTTAACAGTCTAAATCAAGGCCCTCGAGCTCTTTCATTTAGTCCTACGGAAAATGCAGTTCTTATCTGCTCAGATGTGGACGGCGGATCTTATGAGCTCTATGTCATACCTAAAGACAGCATTGGCAGGGGTGATACGATGCAAGAGGCAAAAAGAGGTATTGGAGGATCAGCTGTCTTTGTGGCTCGAAACCGGTTTGCGGTGCTTGACAGAACCAACAATCAAGCATTAGTCAAGAACCTAAAGAATGAGACTGTGAAAAAGAGTGGCCTCCCTATTACTGCTGATGCCATATTCTATGCTGGAACTGGGAACTTACTTTGTAGGGCAGAGGATAGGGTGGTCATATTTGACCTCCAGCAAAGGATTGTTTTGGGTGATCTTCAAACACCTAATGTCAAGTATGTTATCTGGTCCAATGACATGGAGAGTGTTGCTTTGCTCAGCAAGCATGCTATAGTTATTGCGAGTAAGAAGCTTGTGCACCAGTGCTATTTACACGAGGCGATTCGTGTGAAGAGCGGAGGCTGGGATGACAATGGTGTGTTTATATATACGACCCTTAATCACCTTAAATACTGCCTACCCAACGGAGATGTTGGGACGATAAAGACCCTTGATGTTCCAATATACATTACAAAAGTATCGGGGAATAAGATTTTTTGCTTGGATCGGGATGGGAAGAACAGGGTTATAGTTATTGACGCAACAGAATATATGTTCAAGCTATCATTGATGAAGCAAAAATATGACCATGTGATGAGCATGATAAGGAATTCGCAGCTCTGTGGGCAGGCAATGATTGCTTATTTGCAGCAAAAGGGATTCCCTGAGGTTGCTCTCCATTTTGTGAAAGACGAGAGGACTCGTTTCAATTTGGCTCTAGAGAGTGGCAACATTCAGATTGCGGTTGCTTCAGCTAAGGAAATTGATGAGAAGGATCATTGGTATAGATTGGGGGTTGAGGCTCTTCGCCAGGGTAATGCCGGCATTGTAGAGTATGCCTACCAGAGAACAAAGAATTTCGAGAGGTTATCTTTCCTTTATCTTATAACTGGGAATATGGAAAAATTGTCCAAAATGCTTAAAATTGCCGAAGTCAAGAATGATGTAATGGGCCAGTTCCATAATGCTCTTTATCTGGGTGACGTTCGAGAGCGTGTCAAGATTTTGGAGAATGCTGGGCATTTTCCACTTGCGTATATCACTGCTTCAGTCCATGGGCTACAGGATGTTGTCGAGCGGCTTTCAACTGAATTGGGGGATAATGTTCCGGCCTTGCCTACTGGCAAGGTACCCTCCCTTATGATGCCCCCAGTTCCTATCTTGTCTGGTGGAGATTGGCCCCTCTTAAGAGTAACGCGAGGCATTTTTGAGGGTGGGCTGGATAATATTGCCCATGGTGCTCCTGAAGAAGATGAAGGGGCGGCCGATGCTGATTGGGGTGAAGAATTGGATATTACAGCTGATGTGGATGGCTTAGAGAACGGTGATCTTGCTCAAGTGTTGGATGGAGAAGTGCCTGAAGAAAACCAGGAAGAGGGAGGGTGGGACCTTGAGGATTTGGAGCTTCCACCTGAGGTAGACACCCCAAAGGCTTCTGTCAATTCCCGCTCATCAGTGTTTGTGTCCCCAACTCCTGGTATGCCTGTAAGCCAAATTTGGACTCAAAGGTCTTCTCTTGCTGCCGAACATGCTGCAGCTGGCAATTTTGACACTGCAATGCGGTTGTTGAGCCGGCAACTTGGAATAAGAAATTTCACTCCTTTAAGATCCATGTTCCTTGATCTTCACACTGGCAGCCATAGTTATCTACGTGCATTCTCTTCTGCTCCAGTGTTATCTCTGGCGGTTGAACGTGGGTGGAGCGAGTCTGCGAGCCCTAACGTAAGGGGTCCACCGGCACTCGTGTTCAATTTCTCTCAATTGGAAGAGAAACTCAAGGCTGGTTACAAAGCCACCACCACGGGGAACTTCACTGGGGCTCTTCGGCTTTTCCTCGGTATTCTCCATACTATTCCTCTGATTGTGGTCGAGTCTAGAAGGGAAGTTGACGAAGTAAAGGAACTGATTGTTATTGTGAAGGAATATGTTTTGGGTCTGCGAATGGAACTTAAGAGAAAGGAACTCAAAGACGATCCGATCCGGCAGCAAGAGCTTGCTGCCTATTTTACCCACTGCAATCTTCAAAAGCCCCACTTGAGGCTTGCCTTGTTAAACGCGATGAGGGTGTGTTTCAACGCGAAGAACCTCAGTACAGCTGCTAATTTTGCCAGACGACTTTTAGAGACCAACCCCACCGTTGAGAACCAAGCAAAGAGTGCAAGGCAAGTGCTTCAGGCTGCTGAGAATAATATGAGAGATGTTTCTCAGCTGAATTATGATTTTAGAAATCCATTTGTGGTGTGTGGGGCAACTTATGTGCCTATTTACCGAGGACAAAAAGATGTATCGTGCCCCTACTGCAGTTCCCGGTTTGTGCCTAGCCAAGAGGGGAATATCTGTAACATTTGTGAAATTGCGGTGATTGGGGTGGATGCTTCTGGTTTGCTATGTTCTCCCTCCCAGGTAAGATAA

Network for GWHGAAZE018411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	43	79	8.30E-05
PF00400.33	WD40	84	121	4.90E-08
PF00400.33	WD40	126	163	1.70E-07
PF00400.33	WD40	198	231	0.00081
PF00400.33	WD40	241	276	2.50E-05
PF04053.15	Coatomer_WDAD	340	768	6.90E-133
PF06957.12	COPI_C	815	1218	8.20E-168

Protein Sequence

>GWHPAAZE018422
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQVWDYRMGTLIDKFDEHDGPVRGVHFHKTQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDLLRLSQMNTDLFGGIDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDSKAWEVDTLRGHMNNVSCVMFHAKQDMIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDSMFYAKDRFLRFYEFSTQKDTQVIPIRRPGFNSLNQGPRALSFSPTENAVLICSDVDGGSYELYVIPKDSIGRGDTMQEAKRGIGGSAVFVARNRFAVLDRTNNQALVKNLKNETVKKSGLPITADAIFYAGTGNLLCRAEDRVVIFDLQQRIVLGDLQTPNVKYVIWSNDMESVALLSKHAIVIASKKLVHQCYLHEAIRVKSGGWDDNGVFIYTTLNHLKYCLPNGDVGTIKTLDVPIYITKVSGNKIFCLDRDGKNRVIVIDATEYMFKLSLMKQKYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMEKLSKMLKIAEVKNDVMGQFHNALYLGDVRERVKILENAGHFPLAYITASVHGLQDVVERLSTELGDNVPALPTGKVPSLMMPPVPILSGGDWPLLRVTRGIFEGGLDNIAHGAPEEDEGAADADWGEELDITADVDGLENGDLAQVLDGEVPEENQEEGGWDLEDLELPPEVDTPKASVNSRSSVFVSPTPGMPVSQIWTQRSSLAAEHAAAGNFDTAMRLLSRQLGIRNFTPLRSMFLDLHTGSHSYLRAFSSAPVLSLAVERGWSESASPNVRGPPALVFNFSQLEEKLKAGYKATTTGNFTGALRLFLGILHTIPLIVVESRREVDEVKELIVIVKEYVLGLRMELKRKELKDDPIRQQELAAYFTHCNLQKPHLRLALLNAMRVCFNAKNLSTAANFARRLLETNPTVENQAKSARQVLQAAENNMRDVSQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCSSRFVPSQEGNICNICEIAVIGVDASGLLCSPSQVR

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030126	cellular_component	COPI vesicle coat
GO:0030117	cellular_component	membrane coat
GO:0005515	molecular_function	protein binding
GO:0005198	molecular_function	structural molecule activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.466
	SRR3591706	second leaf	16.405
	SRR3591707	mature leaf	20.626
	SRR3591708	Shoot apex	24.751
	SRR3591709	Stem	29.528
	SRR3591710	White floral bud	47.576
	SRR3591711	White flower	51.349
	SRR3591712	Green floral bud	54.992
	SRR3591713	Yellow flower	42.114
SRP173429	SRR8316895	Juvenile bud stage	16.589
	SRR8316896	Juvenile bud stage	21.313
	SRR8316897	Juvenile bud stage	11.227
	SRR8316894	Third green stage	11.326
	SRR8316900	Third green stage	32.905
	SRR8316901	Third green stage	29.663
	SRR8316898	Complete white stage	12.511
	SRR8316899	Complete white stage	44.313
	SRR8316903	Complete white stage	25.844
	SRR8316902	Silver flowering stage	14.766
	SRR8316904	Silver flowering stage	23.244
	SRR8316905	Silver flowering stage	11.596
	SRR8316906	Gold flowering stage	33.753
	SRR8316907	Gold flowering stage	30.493
	SRR8316908	Gold flowering stage	37.733
SRP132670	SRR6706286	Control	34.368
	SRR6706287	Light intensity 50%	36.086
	SRR6706288	Light intensity 20%	39.866
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.294
	CNS0095593	Slightly white alabastrum(diploid) 2	17.218
	CNS0095594	Slightly white alabastrum(diploid) 3	15.164
	CNS0095595	Whole white alabastrum(diploid) 2	17.774
	CNS0095596	Whole white alabastrum(diploid) 3	17.106
	CNS0095597	Whole white alabastrum(diploid) 4	18.270
	CNS0095598	Silvery flower (diploied) 1	24.420
	CNS0095599	Silvery flower (diploied) 2	19.401
	CNS0095600	Silvery flower (diploied) 3	58.786
	CNS0095601	Golden flower (diploid) 1	21.132
	CNS0095602	Golden flower (diploid) 2	57.882
	CNS0095603	Golden flower (diploid) 3	56.523
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.826
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.894
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.337
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.592
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.659
	CNS0095610	Silvery flower (tetraploid) 1	57.740
	CNS0095611	Silvery flower (tetraploid) 2	67.109
	CNS0095612	Silvery flower (tetraploid) 3	52.864
	CNS0095613	Golden flower (tetraploid) 1	25.001
	CNS0095614	Golden flower (tetraploid) 2	49.794
	CNS0095615	Golden flower (tetraploid) 3	50.539
CRA001975	CRR073297	Stem 1	36.038
	CRR073298	Stem 2	33.885
	CRR073299	Stem 3	35.950
	CRR073300	Leaf 1	44.753
	CRR073301	Leaf 2	35.395
	CRR073302	Leaf 3	29.333
	CRR073303	Juvenile bud 1	41.756
	CRR073304	Juvenile bud 2	30.537
	CRR073305	Juvenile bud 3	58.064
	CRR073306	Third green 1	14.415
	CRR073307	Third green 2	12.310
	CRR073308	Third green 3	15.757
	CRR073309	Second white 1	26.237
	CRR073310	Second white 2	21.441
	CRR073311	Second white 3	27.050
	CRR073312	Silver flowering 1	24.821
	CRR073313	Silver flowering 2	27.827
	CRR073314	Silver flowering 3	22.425
	CRR073315	Gold flowering 1	17.043
	CRR073316	Gold flowering 2	23.513
	CRR073317	Gold flowering 3	25.323
	CRR073318	Tawny withering 1	28.197
	CRR073319	Tawny withering 2	21.727
	CRR073320	Tawny withering 3	26.011