Gene detail

Detail information of GWHGAAZE018416

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602233.1	0	PREDICTED: cysteine proteinase RD19a-like [Nicotiana tomentosiformis]
Swissprot	tr\|P43296\|RD19A_ARATH	0	Cysteine proteinase RD19a (Precursor)
trEMBL	tr\|A5HIJ3\|A5HIJ3_ACTDE	0	Cysteine protease Cp3 {ECO:0000313\|EMBL:ABQ10201.1}
TAIR10	AT4G39090.1	9E-161	Papain family cysteine protease

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19269255	19271320	-
GWHAAZE00000005	mRNA	19269255	19271320	-
GWHAAZE00000005	exon	19269255	19269812	-
GWHAAZE00000005	exon	19270457	19270576	-
GWHAAZE00000005	exon	19270841	19271320	-
GWHAAZE00000005	CDS	19270841	19271320	-
GWHAAZE00000005	CDS	19270457	19270576	-
GWHAAZE00000005	CDS	19269255	19269812	-

Transcript Sequence
>GWHTAAZE018438 ATGGGCAGGTATCTAATGAAAAGCATGGATCTCCTTTTCTCTTTCCTCCTCGTTTTCTCTCTCCTCCTTACGACGTCGTTAGCCTCCTCTTCATCCTTCAACGGATCCTCAGACGATCCCCTGATCCGTCAGGTCGTAGGCAGGGACAGCAGGTTAAACGCCGGCCACCACTTCGAGATCTTCAAGCGCCGTTTCGGCAAGTCTTACGCCTCACACGAGGAGCACCATTTCAGGTTCTCGGTTTTCAAGGCTAACCTGCGCCGCGCGAGGCGCCACCAGGAGCTCGATCCGTCGGCAGTTCACGGTGTTACTCAGTTCTCCGATTTGACACCGGCAGAGTTCCGGCGGAATCACCTGGGGTTGATGAAGAGTGTTAGTGTTCCGTATGATGCCAATAAAGCTCCGATTCTTCCGACCAATGACCTACCGACTGATTTCGATTGGAGAGAAAAAGGTGCCGTTACGGCTGTAAAGAATCAGGGTTCATGTGGGTCGTGCTGGTCGTTTAGCACCACGGGAGCTTTGGAAGGTGCAAATTTCCTTGCAACCGGAAAGCTTGAGAGTCTCAGCGAGCAACAGCTTGTAGATTGTGACCATGAGTGTGATCCAGATGAACCACGTTCATGCGACTCTGGGTGCAACGGAGGGCTAATGAATAGCGCATTCGAGTACACCCTAAAATCCGGTGGACTTATGCGAGAGCAAGACTACCCATATACTGGTACTGACCGTGGAACCTGCCAATTCGACAAGAGCAAGATCGCGGCCTCAGTGGCTAATTTCAGCATGGTCTCCCTTAACGAAGACCAGATAGCGGCAAATCTGGTGAAAAATGGGCCTCTTGCAGTGGCTATAAACGCAGTATTCATGCAGACATATGTGGGTGGGGTTTCGTGCCCCTACATATGCTCGAGGCGGTTGGACCATGGCGTTTTATTGGTGGGGTACGGTTCGGCTGACTATTCACCCATCAGAATGAAGGAGAAGCCGTATTGGATCATCAAGAACTCTTGGGGAGAAAGCTGGGGGGAGAGAGGTTACTATAAAATCTGCAGGGGACGTAATATTTGTGGAGTTGACTCCATGGTTTCCACTGTTGCTGCTGGTGTTCATCCGAATTCTCACAGCGCGCAGCATCAAGGCGTGAATGTGGTATAG

Network for GWHGAAZE018416

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08246.13	Inhibitor_I29	58	114	2.60E-10
PF00112.24	Peptidase_C1	142	365	1.30E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01373	CTSF	Lysosome	map04142
		Apoptosis	map04210
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.812
	SRR3591706	second leaf	2.037
	SRR3591707	mature leaf	0.221
	SRR3591708	Shoot apex	0.855
	SRR3591709	Stem	1.491
	SRR3591710	White floral bud	6.551
	SRR3591711	White flower	0.451
	SRR3591712	Green floral bud	18.894
	SRR3591713	Yellow flower	0.445
SRP173429	SRR8316895	Juvenile bud stage	5.056
	SRR8316896	Juvenile bud stage	13.478
	SRR8316897	Juvenile bud stage	4.252
	SRR8316894	Third green stage	4.668
	SRR8316900	Third green stage	15.337
	SRR8316901	Third green stage	17.326
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.567
	SRR8316903	Complete white stage	0.175
	SRR8316902	Silver flowering stage	0.273
	SRR8316904	Silver flowering stage	0.337
	SRR8316905	Silver flowering stage	0.134
	SRR8316906	Gold flowering stage	0.173
	SRR8316907	Gold flowering stage	0.446
	SRR8316908	Gold flowering stage	0.117
SRP132670	SRR6706286	Control	9.345
	SRR6706287	Light intensity 50%	8.680
	SRR6706288	Light intensity 20%	7.975
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.438
	CNS0095593	Slightly white alabastrum(diploid) 2	11.751
	CNS0095594	Slightly white alabastrum(diploid) 3	26.950
	CNS0095595	Whole white alabastrum(diploid) 2	25.826
	CNS0095596	Whole white alabastrum(diploid) 3	35.451
	CNS0095597	Whole white alabastrum(diploid) 4	25.300
	CNS0095598	Silvery flower (diploied) 1	0.267
	CNS0095599	Silvery flower (diploied) 2	1.641
	CNS0095600	Silvery flower (diploied) 3	0.442
	CNS0095601	Golden flower (diploid) 1	0.464
	CNS0095602	Golden flower (diploid) 2	0.412
	CNS0095603	Golden flower (diploid) 3	0.579
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.403
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.350
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.730
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.007
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.900
	CNS0095610	Silvery flower (tetraploid) 1	0.124
	CNS0095611	Silvery flower (tetraploid) 2	0.297
	CNS0095612	Silvery flower (tetraploid) 3	1.248
	CNS0095613	Golden flower (tetraploid) 1	0.291
	CNS0095614	Golden flower (tetraploid) 2	0.235
	CNS0095615	Golden flower (tetraploid) 3	0.756
CRA001975	CRR073297	Stem 1	5.192
	CRR073298	Stem 2	6.105
	CRR073299	Stem 3	7.651
	CRR073300	Leaf 1	11.325
	CRR073301	Leaf 2	10.874
	CRR073302	Leaf 3	8.116
	CRR073303	Juvenile bud 1	12.336
	CRR073304	Juvenile bud 2	14.949
	CRR073305	Juvenile bud 3	1.516
	CRR073306	Third green 1	4.823
	CRR073307	Third green 2	6.299
	CRR073308	Third green 3	5.331
	CRR073309	Second white 1	0.554
	CRR073310	Second white 2	0.533
	CRR073311	Second white 3	0.804
	CRR073312	Silver flowering 1	3.135
	CRR073313	Silver flowering 2	6.169
	CRR073314	Silver flowering 3	2.478
	CRR073315	Gold flowering 1	4.567
	CRR073316	Gold flowering 2	1.230
	CRR073317	Gold flowering 3	3.541
	CRR073318	Tawny withering 1	2.354
	CRR073319	Tawny withering 2	2.745
	CRR073320	Tawny withering 3	5.266