Gene detail

Detail information of GWHGAAZE018418

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006362023.1	0	PREDICTED: WD repeat-containing protein 13-like [Solanum tuberosum]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	0.00000001	Protein Mut11
trEMBL	tr\|M1D1Z4\|M1D1Z4_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400079519}
TAIR10	AT2G16405.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19290002	19297631	+
GWHAAZE00000005	mRNA	19290002	19297631	+
GWHAAZE00000005	exon	19290002	19290193	+
GWHAAZE00000005	exon	19290634	19290743	+
GWHAAZE00000005	exon	19292024	19292093	+
GWHAAZE00000005	exon	19292482	19292626	+
GWHAAZE00000005	exon	19292734	19292871	+
GWHAAZE00000005	exon	19293925	19294064	+
GWHAAZE00000005	exon	19295837	19295947	+
GWHAAZE00000005	exon	19296044	19296225	+
GWHAAZE00000005	exon	19296311	19296426	+
GWHAAZE00000005	exon	19297354	19297430	+
GWHAAZE00000005	exon	19297527	19297631	+
GWHAAZE00000005	CDS	19290002	19290193	+
GWHAAZE00000005	CDS	19290634	19290743	+
GWHAAZE00000005	CDS	19292024	19292093	+
GWHAAZE00000005	CDS	19292482	19292626	+
GWHAAZE00000005	CDS	19292734	19292871	+
GWHAAZE00000005	CDS	19293925	19294064	+
GWHAAZE00000005	CDS	19295837	19295947	+
GWHAAZE00000005	CDS	19296044	19296225	+
GWHAAZE00000005	CDS	19296311	19296426	+
GWHAAZE00000005	CDS	19297354	19297430	+
GWHAAZE00000005	CDS	19297527	19297631	+

Transcript Sequence
>GWHTAAZE018440 ATGGCGGAACAGACGATTGAAAAAAGCTCGTCTGAAGATGACCATAAGAAGAAGAAAGAGGACTTCACATCAGATCCAGAATTCTTCAGTTGTATGCTTCAGCCTTGCCCCGCCGATTCCGATCCTAATTACATCGGAATCCGCCGCCTTCTTCTCTATCGCAAGGCCCAATCTGGTGTTCTTCGCCGCAAGGACTGGAGGTGCAATGGAAAAGGATATGTGGCCTTCCGTAACTACATAAGCAGGCCGAGGAATTGGGAAAGTTTGCATATACAAAGCCATCCGAGCTCACCTGGAAACAGTGGGCGATGGATGCCATCTCCAGGTCCACTCTCCCAATCATTTGAGGTGGAGAGCTGGAGTACAGGCAGGGAACTACGAAGTGCTAGTCAGGCATTGAGTCGGACTACAAGTTTCAGCTCAAATGCAAGTGACATTGATCACCCCCATAAAAAGGCTGAACCTGCGTATTCGTTTGTAGGGATGCATTGCATCTTTGACCAATGCAAAGCCATGGTTACGGTTTTAAAGTTTGGGCACACGAGTTCTGATTTACTCGCCTATGGGGCATCGGATGGAACCTTGACAGTGTGCACTGTCTCCCAGCCTCCTTCAGTCATCAAGCAGTTAACAGGGCACTCAAAAGATGTCACAGATTTTGACTTCTCATTGAACAATCAATACATTGCATCATCCTCACTGGATAAAACTGTGAGAGTGTGGGATATCTCCAAAGGCCTTTGCATTCGAGTTATATATGGAGTCTCTTCACAAATGTGTATTCGGTTTCACCCGGTGTTCAACTTTAGCACTGGGAGAACTATCCATAAATCAGTCTTTGATAGTGAGGTTACTGCTATGGACCATGACCACACTGGTCAGCTTATTTTCTGTGGTGACGTTCAGGGAAATATATATACAGTTAAAATGGACTCCCGGACAGGTACCTTGTCTCGGTCTTACCGTAGTCGAATTAGTAGCAAGCGAAAATCTCCAGTCACAACTGTGCAGTACAGAACCTTCTCTCTGCTGACAAGAGGTCCTGTGCTTCTCTCATTCAGTCGAGATGGAAGCTTGTCTTTCTTCAGCGTTGAAACACAAGGTTATTTAACTCTACGCTGCTCACTGAAATTGGCTTCACGACAGCACAGCATTCGTGCTTCTTTCTGCCCACTGCTATCCCTTGAAAAAGGAGAATACATAGTTGTTGGAAGTGAGGATGCAAACGTCTACTTCTATGACTTAACTAAGCCAAAGCATACATGTGTAAACAAGTTACAGGGTCATGGTTACCCAGCTATAGGGATTGCTTGGAACCATGGGGAGAATTTGTTGGCTTCTTCTGATTTTGGCGGCACTGTTATTGTATGGAAGAGAGCAAAGTAG

Network for GWHGAAZE018418

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	207	242	2.20E-08
PF00400.33	WD40	422	458	0.12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.974
	SRR3591706	second leaf	18.155
	SRR3591707	mature leaf	12.982
	SRR3591708	Shoot apex	18.714
	SRR3591709	Stem	33.115
	SRR3591710	White floral bud	38.053
	SRR3591711	White flower	33.433
	SRR3591712	Green floral bud	30.098
	SRR3591713	Yellow flower	30.694
SRP173429	SRR8316895	Juvenile bud stage	14.408
	SRR8316896	Juvenile bud stage	18.757
	SRR8316897	Juvenile bud stage	11.760
	SRR8316894	Third green stage	11.160
	SRR8316900	Third green stage	29.251
	SRR8316901	Third green stage	29.909
	SRR8316898	Complete white stage	29.632
	SRR8316899	Complete white stage	42.309
	SRR8316903	Complete white stage	44.063
	SRR8316902	Silver flowering stage	26.120
	SRR8316904	Silver flowering stage	32.795
	SRR8316905	Silver flowering stage	16.237
	SRR8316906	Gold flowering stage	49.050
	SRR8316907	Gold flowering stage	48.626
	SRR8316908	Gold flowering stage	46.318
SRP132670	SRR6706286	Control	29.212
	SRR6706287	Light intensity 50%	33.480
	SRR6706288	Light intensity 20%	35.508
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.393
	CNS0095593	Slightly white alabastrum(diploid) 2	19.843
	CNS0095594	Slightly white alabastrum(diploid) 3	14.360
	CNS0095595	Whole white alabastrum(diploid) 2	17.826
	CNS0095596	Whole white alabastrum(diploid) 3	14.496
	CNS0095597	Whole white alabastrum(diploid) 4	17.519
	CNS0095598	Silvery flower (diploied) 1	18.522
	CNS0095599	Silvery flower (diploied) 2	21.678
	CNS0095600	Silvery flower (diploied) 3	41.263
	CNS0095601	Golden flower (diploid) 1	16.442
	CNS0095602	Golden flower (diploid) 2	29.182
	CNS0095603	Golden flower (diploid) 3	29.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.333
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.272
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.673
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.486
	CNS0095610	Silvery flower (tetraploid) 1	32.147
	CNS0095611	Silvery flower (tetraploid) 2	27.068
	CNS0095612	Silvery flower (tetraploid) 3	50.168
	CNS0095613	Golden flower (tetraploid) 1	22.860
	CNS0095614	Golden flower (tetraploid) 2	24.090
	CNS0095615	Golden flower (tetraploid) 3	34.591
CRA001975	CRR073297	Stem 1	31.274
	CRR073298	Stem 2	28.303
	CRR073299	Stem 3	21.479
	CRR073300	Leaf 1	37.735
	CRR073301	Leaf 2	39.692
	CRR073302	Leaf 3	28.308
	CRR073303	Juvenile bud 1	32.463
	CRR073304	Juvenile bud 2	26.327
	CRR073305	Juvenile bud 3	24.944
	CRR073306	Third green 1	38.863
	CRR073307	Third green 2	32.801
	CRR073308	Third green 3	37.431
	CRR073309	Second white 1	29.291
	CRR073310	Second white 2	40.434
	CRR073311	Second white 3	32.898
	CRR073312	Silver flowering 1	28.366
	CRR073313	Silver flowering 2	20.020
	CRR073314	Silver flowering 3	26.978
	CRR073315	Gold flowering 1	13.368
	CRR073316	Gold flowering 2	15.361
	CRR073317	Gold flowering 3	9.977
	CRR073318	Tawny withering 1	35.550
	CRR073319	Tawny withering 2	30.497
	CRR073320	Tawny withering 3	27.818