Detail information of GWHGAAZE018420


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010647688.10PREDICTED: RNA-binding protein 28 isoform X1 [Vitis vinifera]
Swissprottr|Q9FMG4|SC35_ARATH9E-10Serine/arginine-rich splicing factor SC35
trEMBLtr|F6I1A7|F6I1A7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60723.1}
TAIR10AT2G21440.10RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1930754619316844-
GWHAAZE00000005mRNA1930754619316844-
GWHAAZE00000005exon1930754619308231-
GWHAAZE00000005exon1930833719308466-
GWHAAZE00000005exon1930856319308731-
GWHAAZE00000005exon1930929819309368-
GWHAAZE00000005exon1930954519309758-
GWHAAZE00000005exon1930984619310365-
GWHAAZE00000005exon1931123319311347-
GWHAAZE00000005exon1931145619311510-
GWHAAZE00000005exon1931159619311678-
GWHAAZE00000005exon1931179419311844-
GWHAAZE00000005exon1931289519313034-
GWHAAZE00000005exon1931392019314101-
GWHAAZE00000005exon1931464619314721-
GWHAAZE00000005exon1931481919314896-
GWHAAZE00000005exon1931499519315165-
GWHAAZE00000005exon1931525919315389-
GWHAAZE00000005exon1931632019316356-
GWHAAZE00000005exon1931658919316649-
GWHAAZE00000005exon1931676819316844-
GWHAAZE00000005five_prime_UTR1931676819316844-
GWHAAZE00000005five_prime_UTR1931660519316649-
GWHAAZE00000005CDS1931658919316604-
GWHAAZE00000005CDS1931632019316356-
GWHAAZE00000005CDS1931525919315389-
GWHAAZE00000005CDS1931499519315165-
GWHAAZE00000005CDS1931481919314896-
GWHAAZE00000005CDS1931464619314721-
GWHAAZE00000005CDS1931392019314101-
GWHAAZE00000005CDS1931289519313034-
GWHAAZE00000005CDS1931179419311844-
GWHAAZE00000005CDS1931159619311678-
GWHAAZE00000005CDS1931145619311510-
GWHAAZE00000005CDS1931123319311347-
GWHAAZE00000005CDS1930984619310365-
GWHAAZE00000005CDS1930954519309758-
GWHAAZE00000005CDS1930929819309368-
GWHAAZE00000005CDS1930856319308731-
GWHAAZE00000005CDS1930833719308466-
GWHAAZE00000005CDS1930754619308231-
Transcript Sequence

Network for GWHGAAZE018420

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_17411.10E-05
PF00076.23RRM_12863493.70E-13
PF00076.23RRM_15165762.20E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14573NOP4, RBM28 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.841
SRR3591706second leaf6.605
SRR3591707mature leaf8.014
SRR3591708Shoot apex15.781
SRR3591709Stem11.094
SRR3591710White floral bud9.826
SRR3591711White flower20.164
SRR3591712Green floral bud16.236
SRR3591713Yellow flower12.420
SRP173429 SRR8316895Juvenile bud stage 9.218
SRR8316896Juvenile bud stage 11.619
SRR8316897Juvenile bud stage 4.938
SRR8316894Third green stage 5.529
SRR8316900Third green stage 15.000
SRR8316901Third green stage 13.455
SRR8316898Complete white stage 2.241
SRR8316899Complete white stage 13.111
SRR8316903Complete white stage 5.683
SRR8316902Silver flowering stage6.204
SRR8316904Silver flowering stage8.071
SRR8316905Silver flowering stage2.684
SRR8316906Gold flowering stage 9.123
SRR8316907Gold flowering stage 9.045
SRR8316908Gold flowering stage 13.643
SRP132670SRR6706286Control15.505
SRR6706287Light intensity 50%14.823
SRR6706288Light intensity 20%15.709
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.081
CNS0095593Slightly white alabastrum(diploid) 210.044
CNS0095594Slightly white alabastrum(diploid) 38.447
CNS0095595Whole white alabastrum(diploid) 26.666
CNS0095596Whole white alabastrum(diploid) 36.945
CNS0095597Whole white alabastrum(diploid) 47.276
CNS0095598Silvery flower (diploied) 19.863
CNS0095599Silvery flower (diploied) 27.359
CNS0095600Silvery flower (diploied) 39.135
CNS0095601Golden flower (diploid) 15.384
CNS0095602Golden flower (diploid) 28.277
CNS0095603Golden flower (diploid) 37.114
CNS0095604Slightly white alabastrum(tetraploid) 18.676
CNS0095605Slightly white alabastrum(tetraploid) 27.250
CNS0095606Slightly white alabastrum(tetraploid) 315.848
CNS0095607Whole white alabastrum(tetraploid) 14.299
CNS0095608Whole white alabastrum(tetraploid) 23.988
CNS0095609Whole white alabastrum(tetraploid) 39.414
CNS0095610Silvery flower (tetraploid) 114.722
CNS0095611Silvery flower (tetraploid) 212.204
CNS0095612Silvery flower (tetraploid) 311.018
CNS0095613Golden flower (tetraploid) 16.550
CNS0095614Golden flower (tetraploid) 210.239
CNS0095615Golden flower (tetraploid) 37.976
CRA001975CRR073297Stem 116.917
CRR073298Stem 214.889
CRR073299Stem 311.433
CRR073300Leaf 113.761
CRR073301Leaf 214.659
CRR073302Leaf 39.618
CRR073303Juvenile bud 19.426
CRR073304Juvenile bud 24.638
CRR073305Juvenile bud 311.185
CRR073306Third green 11.535
CRR073307Third green 22.005
CRR073308Third green 32.821
CRR073309Second white 12.951
CRR073310Second white 24.469
CRR073311Second white 33.616
CRR073312Silver flowering 12.616
CRR073313Silver flowering 22.476
CRR073314Silver flowering 31.832
CRR073315Gold flowering 17.785
CRR073316Gold flowering 211.302
CRR073317Gold flowering 33.609
CRR073318Tawny withering 110.349
CRR073319Tawny withering 211.249
CRR073320Tawny withering 310.220