Gene detail

Detail information of GWHGAAZE018423

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97018.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SJT0\|Y2214_ARATH	0	Probable receptor-like protein kinase At2g21480 (Precursor)
trEMBL	tr\|A0A068TNT0\|A0A068TNT0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97018.1}
TAIR10	AT2G21480.1	1E-159	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19346330	19348590	-
GWHAAZE00000005	mRNA	19346330	19348590	-
GWHAAZE00000005	exon	19346330	19346795	-
GWHAAZE00000005	exon	19347221	19348590	-
GWHAAZE00000005	CDS	19347221	19348590	-
GWHAAZE00000005	CDS	19346330	19346795	-

Transcript Sequence
>GWHTAAZE018445 ATGGCGACCCCGGGTTGGCATTGGGTTCGCCTCCATTTCTTCCCCGTGAATAACAGCGAGTTCAATCTCCAACACTCGAAATTCTCCGTTACTTCAGGTGATTTAGTCCTACTTCATGACTTTGCCGTAGAAGAGGCAAAATTTGAAGCCAAGGAGTATCTTGTAAATGTGATCAACGAGCGTTTCTCTCTAAAATTCACCCCCACAAAGGACTCGTCAGCGTTCATCAATGCCATCGAGGTGGTCTCTGCCCCCGATATGTTGATTAGTGACAAGGGTTCCACCCTCTTCCCTATCGGAGAAATTTCCGGGCTTAACTCTTACGCTTACCAGGTTATGTACCGCCTCAATGTTGGTGGTTCGTTAATCACTGTCCAAAATGACACCCTTGGACGAACTTGGAACCCTGACCATCTATACCTTAAACTTGCTAATGCGGGTAAAAATGTCTCTGTTGCACCAAAAGTTGTTAAGTACCCCCAAGGAGGGTCTCCACTTATCGCTCCACCGGCAGTGTATGCATCCGCAGTTGAGATGGGGGATGCTAATATTGGTGGTGCTAATTTCAATATAACATGGAATTTTGAGGTGGATACATCATTTTCGTACTTTATTCGTCTCCATTTTTGTGACATCGTGAGCAAAGCACTTAACGACCTTTATTTTAATGTGTACATTGCTGGGAAAATGGCCATCTCAGGGCTAGATTTATCGACTGTCACGGGTGAACTAGCAAGCGCGTACTATAAAGACTTTGTTGTGAACTCTTCCCTTGTATCTAATCCACTAACTGTTCAAATTGGAACGAGGAATGATGCCAATGGGGCAAGGAACGCAATTCTTAATGGTGTTGAGGTATTGAAAATTAATAATACGGTAACTAGTTTAGACGGTGAGTTTGGTGTGGATGGTAGATCGGCTGATGGACACCGTGGAACTGTTGCTGCAGTCGGTTTTGCAATGATGTTCGGCGCATTTGTGGGATTGGGTGCTATGGCAGTCAAGTGGCAAAAACGGCCTCCTGATTGGCAAAGGCGAAATAGTTTTTCATCATGGCTTCTCCCTCTTCATGCCGGAGAAACAAGCTTTATGTCAAGCAAAACTAACTTGGGTTCTCGCAAGAGCACATTCATCTCATCATCAATGGGACTCGGTCGAGTACTCTCGTTTGTAGAGTTGCAAGAAGCAACCAAGAACTGGGACCCAAACACGGTGATCGGTGTTGGAGGGTTCGGTAATGTCTATCTTGCAGAGATTGATGACGGGCTCAAAGTGGCCATCAAGCGAGGGAATCCGCAATCCGAACAAGGCATCACTGAGTTCCAAACCGAGATTCAAATGCTGTCGAAGCTTCGCCATCGCCATTTAGTGCCGGCAATTAACCCGGCATTGCCGAGGGAACAAGTGAACTTGGCTGAGTGGGCAATGCAATGGAAGCGAAAAGGCTTGCTCAACAAGATCATAGATCCAACTCTAGCTGGAAGTATTAATCCCGAATCTATGCAGAAATTTGCCGAAGCTGCAGAGAAGTGTTTGGCTGAATATGGGGTCGATCGGCCTTCAATGGGCGATGTGTTGTGGAATTTAGAATATGCTTTGCAACTGCAAGAAGCTTCTTCACAAGGAAAGGCCAATGATGATGAAAACAAGGCATTTGCTGTTGCTGCCTCTCCGGCTACGATTACACCTGCCCCTGCCACCCCTACTGGTAGTGCTGATAACCGACCTATTTCTACGCCTGAGGTGAATAATAGGAACCCAGCGGAAGTACAGGTTGTTGATCAGCATTCAGGTACTGCTATGTTTGCTCAATTTGCGGCACTAAATGGTCGATAA

Network for GWHGAAZE018423

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	7	288	2.00E-31
PF07714.18	PK_Tyr_Ser-Thr	404	469	5.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.546
	SRR3591706	second leaf	0.369
	SRR3591707	mature leaf	0.856
	SRR3591708	Shoot apex	0.636
	SRR3591709	Stem	0.576
	SRR3591710	White floral bud	17.544
	SRR3591711	White flower	1.115
	SRR3591712	Green floral bud	11.385
	SRR3591713	Yellow flower	0.935
SRP173429	SRR8316895	Juvenile bud stage	0.590
	SRR8316896	Juvenile bud stage	0.685
	SRR8316897	Juvenile bud stage	0.513
	SRR8316894	Third green stage	0.066
	SRR8316900	Third green stage	3.352
	SRR8316901	Third green stage	1.809
	SRR8316898	Complete white stage	0.044
	SRR8316899	Complete white stage	0.229
	SRR8316903	Complete white stage	0.375
	SRR8316902	Silver flowering stage	0.277
	SRR8316904	Silver flowering stage	0.566
	SRR8316905	Silver flowering stage	0.181
	SRR8316906	Gold flowering stage	0.425
	SRR8316907	Gold flowering stage	0.075
	SRR8316908	Gold flowering stage	0.243
SRP132670	SRR6706286	Control	3.807
	SRR6706287	Light intensity 50%	5.076
	SRR6706288	Light intensity 20%	3.944
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.569
	CNS0095593	Slightly white alabastrum(diploid) 2	0.733
	CNS0095594	Slightly white alabastrum(diploid) 3	1.002
	CNS0095595	Whole white alabastrum(diploid) 2	4.426
	CNS0095596	Whole white alabastrum(diploid) 3	4.683
	CNS0095597	Whole white alabastrum(diploid) 4	14.015
	CNS0095598	Silvery flower (diploied) 1	1.364
	CNS0095599	Silvery flower (diploied) 2	2.451
	CNS0095600	Silvery flower (diploied) 3	1.309
	CNS0095601	Golden flower (diploid) 1	1.498
	CNS0095602	Golden flower (diploid) 2	1.343
	CNS0095603	Golden flower (diploid) 3	0.940
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.858
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.376
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.114
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.677
	CNS0095610	Silvery flower (tetraploid) 1	0.874
	CNS0095611	Silvery flower (tetraploid) 2	2.087
	CNS0095612	Silvery flower (tetraploid) 3	3.748
	CNS0095613	Golden flower (tetraploid) 1	0.529
	CNS0095614	Golden flower (tetraploid) 2	0.498
	CNS0095615	Golden flower (tetraploid) 3	3.265
CRA001975	CRR073297	Stem 1	1.588
	CRR073298	Stem 2	1.510
	CRR073299	Stem 3	0.698
	CRR073300	Leaf 1	6.014
	CRR073301	Leaf 2	3.084
	CRR073302	Leaf 3	1.580
	CRR073303	Juvenile bud 1	18.416
	CRR073304	Juvenile bud 2	24.964
	CRR073305	Juvenile bud 3	2.072
	CRR073306	Third green 1	9.392
	CRR073307	Third green 2	10.657
	CRR073308	Third green 3	8.368
	CRR073309	Second white 1	1.347
	CRR073310	Second white 2	1.898
	CRR073311	Second white 3	2.090
	CRR073312	Silver flowering 1	12.806
	CRR073313	Silver flowering 2	13.552
	CRR073314	Silver flowering 3	6.258
	CRR073315	Gold flowering 1	9.228
	CRR073316	Gold flowering 2	2.767
	CRR073317	Gold flowering 3	6.731
	CRR073318	Tawny withering 1	7.171
	CRR073319	Tawny withering 2	6.387
	CRR073320	Tawny withering 3	5.684