Detail information of GWHGAAZE018426


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97024.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TM59|A0A068TM59_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97024.1}
TAIR10AT4G39140.55E-69RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1936546019368778-
GWHAAZE00000005mRNA1936546019368778-
GWHAAZE00000005exon1936546019366404-
GWHAAZE00000005exon1936663319366661-
GWHAAZE00000005exon1936845119368778-
GWHAAZE00000005CDS1936845119368778-
GWHAAZE00000005CDS1936663319366661-
GWHAAZE00000005CDS1936546019366404-
Transcript Sequence

Network for GWHGAAZE018426

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.151
SRR3591706second leaf23.835
SRR3591707mature leaf25.123
SRR3591708Shoot apex18.441
SRR3591709Stem30.873
SRR3591710White floral bud87.472
SRR3591711White flower233.376
SRR3591712Green floral bud30.080
SRR3591713Yellow flower185.412
SRP173429 SRR8316895Juvenile bud stage 14.878
SRR8316896Juvenile bud stage 19.848
SRR8316897Juvenile bud stage 7.569
SRR8316894Third green stage 8.679
SRR8316900Third green stage 23.845
SRR8316901Third green stage 23.597
SRR8316898Complete white stage 30.486
SRR8316899Complete white stage 46.334
SRR8316903Complete white stage 46.009
SRR8316902Silver flowering stage44.443
SRR8316904Silver flowering stage54.808
SRR8316905Silver flowering stage25.838
SRR8316906Gold flowering stage 89.644
SRR8316907Gold flowering stage 98.027
SRR8316908Gold flowering stage 123.129
SRP132670SRR6706286Control29.604
SRR6706287Light intensity 50%34.990
SRR6706288Light intensity 20%33.434
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.095
CNS0095593Slightly white alabastrum(diploid) 212.599
CNS0095594Slightly white alabastrum(diploid) 313.021
CNS0095595Whole white alabastrum(diploid) 215.810
CNS0095596Whole white alabastrum(diploid) 314.085
CNS0095597Whole white alabastrum(diploid) 413.912
CNS0095598Silvery flower (diploied) 137.997
CNS0095599Silvery flower (diploied) 226.735
CNS0095600Silvery flower (diploied) 369.965
CNS0095601Golden flower (diploid) 127.940
CNS0095602Golden flower (diploid) 256.883
CNS0095603Golden flower (diploid) 358.787
CNS0095604Slightly white alabastrum(tetraploid) 115.297
CNS0095605Slightly white alabastrum(tetraploid) 214.271
CNS0095606Slightly white alabastrum(tetraploid) 317.460
CNS0095607Whole white alabastrum(tetraploid) 117.623
CNS0095608Whole white alabastrum(tetraploid) 216.618
CNS0095609Whole white alabastrum(tetraploid) 323.060
CNS0095610Silvery flower (tetraploid) 1112.755
CNS0095611Silvery flower (tetraploid) 279.369
CNS0095612Silvery flower (tetraploid) 396.261
CNS0095613Golden flower (tetraploid) 179.876
CNS0095614Golden flower (tetraploid) 281.178
CNS0095615Golden flower (tetraploid) 3128.973
CRA001975CRR073297Stem 126.826
CRR073298Stem 222.223
CRR073299Stem 316.088
CRR073300Leaf 129.518
CRR073301Leaf 225.432
CRR073302Leaf 319.932
CRR073303Juvenile bud 120.693
CRR073304Juvenile bud 228.819
CRR073305Juvenile bud 321.637
CRR073306Third green 149.667
CRR073307Third green 237.273
CRR073308Third green 345.107
CRR073309Second white 150.544
CRR073310Second white 260.799
CRR073311Second white 358.402
CRR073312Silver flowering 167.057
CRR073313Silver flowering 258.573
CRR073314Silver flowering 374.796
CRR073315Gold flowering 117.418
CRR073316Gold flowering 225.489
CRR073317Gold flowering 310.253
CRR073318Tawny withering 124.081
CRR073319Tawny withering 220.914
CRR073320Tawny withering 325.314