Gene detail

Detail information of GWHGAAZE018433

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002283712.1	PREDICTED: diaminopimelate decarboxylase 2, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q94A94\|DCDA2_ARATH	Diaminopimelate decarboxylase 2, chloroplastic (Precursor)
trEMBL	tr\|F6I0M3\|F6I0M3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60489.1}
TAIR10	AT3G14390.1	Pyridoxal-dependent decarboxylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19493501	19497748	+
GWHAAZE00000005	mRNA	19493501	19497748	+
GWHAAZE00000005	exon	19493501	19493979	+
GWHAAZE00000005	exon	19494047	19494074	+
GWHAAZE00000005	exon	19494670	19494843	+
GWHAAZE00000005	exon	19495181	19495330	+
GWHAAZE00000005	exon	19495920	19496081	+
GWHAAZE00000005	exon	19496311	19496452	+
GWHAAZE00000005	exon	19496772	19496899	+
GWHAAZE00000005	exon	19496983	19497072	+
GWHAAZE00000005	exon	19497468	19497748	+
GWHAAZE00000005	CDS	19493501	19493979	+
GWHAAZE00000005	CDS	19494047	19494074	+
GWHAAZE00000005	CDS	19494670	19494843	+
GWHAAZE00000005	CDS	19495181	19495330	+
GWHAAZE00000005	CDS	19495920	19496081	+
GWHAAZE00000005	CDS	19496311	19496452	+
GWHAAZE00000005	CDS	19496772	19496899	+
GWHAAZE00000005	CDS	19496983	19497072	+
GWHAAZE00000005	CDS	19497468	19497548	+
GWHAAZE00000005	three_prime_UTR	19497549	19497748	+

Transcript Sequence
>GWHTAAZE018455 ATGGCGGCTTCTCACTTTCTCTCTCACCCCCCTTCATTTCCTAAAACCCTAAATCACCCCACTTCCCAATTCCTCCCCAAACCCTCAATCCTCTTCAAACCCACCTCCAGAACTCTAAACCTAAGGGCAATCCTGTCCCAAAACCCCACGAAAACCCCAACCCCACAAACCCAGAATTTTCAGCATTGTTTCACAAAATCTGGAGATGGGTTCTTGTATTGTGAGGGTATTAAGGTTGAAGAGATACTGAATACGGTTGAGAGAAGGCCTTTTTATCTGTACAGTAAGGCCCAAATTACTAGAAATGTTGAGGCGTATAGTGAGGCTTTGGAGGGTTTGAATTCGATTATTGGGTATGCGATTAAGGCGAATAATAATTTAAAGATTTTGGAGCATTTGAGGAAGCTGGGGTGTGGGGCTGTGTTGGTTAGTGGTAATGAGCTCCGATTGGCACTTCGGGCCGGTTTTGATCCTACTAGTTTTTGTGTTTTTTGGGATGATAAATGGGTGCATTTTAATGGAAATGGTAAGCTTTTGGAGGATCTGGTGTTGGCTGCCCAAGAAGGTGTCTTTATCAATATTGATAGTGAATTTGATCTGGATAATATTGTATCAGCTGCACGAATTGCTGGGAAGAAGGTTAATGTACTTCTTCGCATAAATCCAGATGTAGACCCTCAGGTTCATGCATATGTTGCCACTGGAAACAAGAACTCCAAATTTGGTATTAGAAACGAGAAACTGCAATGGTTTCTGGATGCTGTGAAGGCACATTCTAATGAACTTAAGCTTGTTGGGGCCCACTGCCATCTTGGGTCTACCATCACCAAGGTAGATATTTTCAGAGACGCAGCAGTTCTTATGGTGAACTACATTGACGAAATCCGTGCCCAAGGATTTGAAATTGATTACTTAAACATCGGAGGTGGTTTGGGGATCGATTATTATCATACTGGAGCAGTGCTTCCCACTCCCAGGGACCTAATTGACACCGTTCGAGAGCTGGTCCTTTCTCGAAATCTCAACCTTATCATTGAACCTGGGAGATCAGTAATTGCAAATACTTGCTGCTTTGTTAATCGTGTCACTGGAGTTAAAACTAACGGGGCAAAGAATTTCGTTGTGATTGATGGCATGCAGCACATAGAGCTGGTTTCTCCTTCAGCACCTGATGCCGAGGTTTCTACTTTTGACGTGGTGGGTCCAGTCTGCGAGTCGGCTGATTTCTTGGGGAAGGATAGGGAACTTCCTACTCCAACCGCGGGTGCTGGCCTTGTAGTTCACGATGCAGGTGCTTACTGTATGAGCATGGCATCAACTTACAATCTCAAGATGCGTCCACCTGAATACTGGGTGGAAGAAGATGGATCAGTGACCAAAATCCGGCATGGGGAGACATTTGAGGACCATATGAGATACTTTGATGGTCTTTAATTAAATTACTCGTTGAAGTCATTTTCTCATTTCTACGTCGACAGGGGTTAAGAGGCTTGAAATTTTCTTGTAATGGTTGTAGAGCCAGCCTGCATGTATGACCCGGATATTGGTTGTATCTGAAAACTAAATTGATTCCCTGATTTTCTGTGTATTGTTTTGTGTTAATCTCAATCATATTCCTTGTTACAAGAGAGCCA

Network for GWHGAAZE018433

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02784.17	Orn_Arg_deC_N	97	353	7.50E-45
PF00278.23	Orn_DAP_Arg_deC	187	431	1.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01586	lysA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Lysine biosynthesis	map00300

Gene Ontology

GO term	Ontology	Name
GO:0009089	biological_process	lysine biosynthetic process via diaminopimelate
GO:0003824	molecular_function	catalytic activity
GO:0008836	molecular_function	diaminopimelate decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.688
	SRR3591706	second leaf	20.543
	SRR3591707	mature leaf	11.514
	SRR3591708	Shoot apex	66.973
	SRR3591709	Stem	21.755
	SRR3591710	White floral bud	12.248
	SRR3591711	White flower	26.445
	SRR3591712	Green floral bud	41.286
	SRR3591713	Yellow flower	19.168
SRP173429	SRR8316895	Juvenile bud stage	30.379
	SRR8316896	Juvenile bud stage	42.568
	SRR8316897	Juvenile bud stage	22.346
	SRR8316894	Third green stage	17.801
	SRR8316900	Third green stage	78.524
	SRR8316901	Third green stage	52.566
	SRR8316898	Complete white stage	4.777
	SRR8316899	Complete white stage	44.417
	SRR8316903	Complete white stage	8.091
	SRR8316902	Silver flowering stage	2.411
	SRR8316904	Silver flowering stage	2.578
	SRR8316905	Silver flowering stage	1.495
	SRR8316906	Gold flowering stage	8.028
	SRR8316907	Gold flowering stage	6.249
	SRR8316908	Gold flowering stage	11.329
SRP132670	SRR6706286	Control	55.823
	SRR6706287	Light intensity 50%	61.287
	SRR6706288	Light intensity 20%	69.812
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.140
	CNS0095593	Slightly white alabastrum(diploid) 2	60.056
	CNS0095594	Slightly white alabastrum(diploid) 3	43.473
	CNS0095595	Whole white alabastrum(diploid) 2	46.190
	CNS0095596	Whole white alabastrum(diploid) 3	50.794
	CNS0095597	Whole white alabastrum(diploid) 4	32.590
	CNS0095598	Silvery flower (diploied) 1	24.356
	CNS0095599	Silvery flower (diploied) 2	23.452
	CNS0095600	Silvery flower (diploied) 3	15.518
	CNS0095601	Golden flower (diploid) 1	18.171
	CNS0095602	Golden flower (diploid) 2	14.804
	CNS0095603	Golden flower (diploid) 3	13.306
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.512
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	91.466
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.240
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.670
	CNS0095609	Whole white alabastrum(tetraploid) 3	73.840
	CNS0095610	Silvery flower (tetraploid) 1	28.429
	CNS0095611	Silvery flower (tetraploid) 2	21.509
	CNS0095612	Silvery flower (tetraploid) 3	19.818
	CNS0095613	Golden flower (tetraploid) 1	9.332
	CNS0095614	Golden flower (tetraploid) 2	20.908
	CNS0095615	Golden flower (tetraploid) 3	3.285
CRA001975	CRR073297	Stem 1	41.530
	CRR073298	Stem 2	45.351
	CRR073299	Stem 3	54.228
	CRR073300	Leaf 1	48.732
	CRR073301	Leaf 2	48.930
	CRR073302	Leaf 3	48.111
	CRR073303	Juvenile bud 1	53.140
	CRR073304	Juvenile bud 2	32.554
	CRR073305	Juvenile bud 3	42.496
	CRR073306	Third green 1	1.921
	CRR073307	Third green 2	0.801
	CRR073308	Third green 3	1.897
	CRR073309	Second white 1	3.236
	CRR073310	Second white 2	3.390
	CRR073311	Second white 3	1.647
	CRR073312	Silver flowering 1	2.926
	CRR073313	Silver flowering 2	5.175
	CRR073314	Silver flowering 3	3.346
	CRR073315	Gold flowering 1	34.537
	CRR073316	Gold flowering 2	47.349
	CRR073317	Gold flowering 3	41.098
	CRR073318	Tawny withering 1	30.597
	CRR073319	Tawny withering 2	34.087
	CRR073320	Tawny withering 3	34.715