Gene detail

Detail information of GWHGAAZE018434

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006384511.1	hypothetical protein POPTR_0004s16470g [Populus trichocarpa]
Swissprot	tr\|P45350\|DRTS_DAUCA	Thymidylate synthase
trEMBL	tr\|B9H0T4\|B9H0T4_POPTR	Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256\|PIRNR:PIRNR000389}
TAIR10	AT2G16370.1	thymidylate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19500572	19504073	+
GWHAAZE00000005	mRNA	19500572	19504073	+
GWHAAZE00000005	exon	19500572	19501003	+
GWHAAZE00000005	exon	19501082	19501480	+
GWHAAZE00000005	exon	19501821	19501930	+
GWHAAZE00000005	exon	19502884	19502949	+
GWHAAZE00000005	exon	19503040	19503114	+
GWHAAZE00000005	exon	19503197	19503362	+
GWHAAZE00000005	exon	19503443	19503566	+
GWHAAZE00000005	exon	19503688	19503794	+
GWHAAZE00000005	exon	19503888	19504073	+
GWHAAZE00000005	CDS	19500572	19501003	+
GWHAAZE00000005	CDS	19501082	19501480	+
GWHAAZE00000005	CDS	19501821	19501930	+
GWHAAZE00000005	CDS	19502884	19502949	+
GWHAAZE00000005	CDS	19503040	19503114	+
GWHAAZE00000005	CDS	19503197	19503362	+
GWHAAZE00000005	CDS	19503443	19503566	+
GWHAAZE00000005	CDS	19503688	19503794	+
GWHAAZE00000005	CDS	19503888	19504073	+

Transcript Sequence
>GWHTAAZE018456 ATGGCTGGTGACACTACGTCAGGGCTTCGGAATGGTAGTGCGAGTACACATACTAATCCACAGAGGACTTACCAAGTTGTTGTGGCTGCTACTCAAAATATGGGTGTTGGTAAGGATGGCAAGTTACCCTGGAGATTGCCTTCCGACCTCAAAATTTTCAAGGATGTTACCATGACTACCTCAGATCCTGTGAAAAAAAATGCAGTCATAATGGGTAGAAAAACCTGGGAAAGTATCCCCCTGAAGCATCGACCACTCCCTGGCCAACTTAATGTTGTTCTGACTCGTTCTGGGAGTTTTGATATTGCAAATGCAGAAAATGTTCTAACATGTGGGACTGTCGTTTCTGCTTTGGAATTACTAGCTGCATCTCCCTACTGTCTATCGATTGAGAAAGTGTTTGTTATAGGAGGTGGACAGATATTAAGGTTTGAAGCCCTCAATGCTCCTGGATGTAATGCTATCCACATTACTGAAATAGAGACAAGCATTGAATGCGATACTTTTATCCCTGCCGTGGATACCTCTTTATTTCAGCCGTGGTATTCATCCTTCCCTTTGGTGGAAAGCGACATTCGCTATTGTTTCACTACTTATGTTTGCGTGAGGAATTCTGCAATTCAACCCCTTGGTCAGATCAACGGTTGGATTTCGGAAAGTAACTCAAATTCTGTTAAGTTTGAGGTGAAGAAGTTCTGTTTCCTTCCCAAGAGGATTTTCGAGAAACACGAGGAGTACTTGTATCTGAGACCTGTTGAAGACATCATCTGTCACGGTGCTTTAAAGGATGACAGGACTGGGACTGGTACTCTATCAAAATTTGGTTGCAAGAAAGTATTTTGGCGTGGAGTTGTTGAAGAGCTCTTGTGGTTTGTCAGTGGTTCCACGAATGCAAAGCTAATGATATCTTTGTTGAACATTTCAGATTATGTGCTTAATTGGTCCTACAGGAAAAGGGCATACATATATGGGATGGCAATGCATCCAGAGACTACCTTGACAGGCAATATTGGTTTGGAGAATAGGGAAGAAGGTGATTTGGGACCAATATATGGGTTTCAGTGGAGACACTTTGGAGCAAGGTATACTGACATGCATGCTGACTACACGGGCCAAGGATTTGATCAGTTGTTAGATGTTATTGACAAGATTAAAAATAATCCGGATGACCGGCGTATTATTCTTTCAGCTTGGAATCCTTCTGATCTCAAACTGATGGCACTTCCACCTTGTCACATGTTTGCACAGTTCTATGTAGCCAAAGGAGAGTTATCTTGTCAATTGTATCAGCGATCTACTGATATGGGTCTGGGTGTGCCCTTTAACATCGCTTCCTATGCCCTGTTAACATGCATGGTTGCTCATGTTTGTGATCTAGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCTCATGTCTATCACACTCGTGTCAGACCTCTAGAGGACCAGCTTCAGAAGCTACCCAAACCTTTTCCGGAAGGCATAGGGTTACCTTTCTCACGATCTTTCTTTTCAGACATTTTGAGGTTCGTCTTTACACATTTAAATGCAGATTTTGAAGATCAATCCTACATGAAGGACATAGATTCCTTTGTGGCTGCTGATTTTAAACTCATTGGTTATGATCCTCACCAGAAAATAGAAATGAAAATGGCAGTGTAG

Network for GWHGAAZE018434

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00186.20	DHFR_1	25	199	3.80E-33
PF00303.20	Thymidylat_synt	248	554	5.20E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13998	DHFR-TS	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Folate biosynthesis	map00790
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0046654	biological_process	tetrahydrofolate biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0006231	biological_process	dTMP biosynthetic process
GO:0006730	biological_process	one-carbon metabolic process
GO:0004146	molecular_function	dihydrofolate reductase activity
GO:0004799	molecular_function	thymidylate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.414
	SRR3591706	second leaf	0.345
	SRR3591707	mature leaf	0.183
	SRR3591708	Shoot apex	2.194
	SRR3591709	Stem	0.990
	SRR3591710	White floral bud	1.095
	SRR3591711	White flower	0.799
	SRR3591712	Green floral bud	1.131
	SRR3591713	Yellow flower	1.484
SRP173429	SRR8316895	Juvenile bud stage	0.770
	SRR8316896	Juvenile bud stage	1.139
	SRR8316897	Juvenile bud stage	0.417
	SRR8316894	Third green stage	0.420
	SRR8316900	Third green stage	0.847
	SRR8316901	Third green stage	0.526
	SRR8316898	Complete white stage	0.206
	SRR8316899	Complete white stage	0.974
	SRR8316903	Complete white stage	0.201
	SRR8316902	Silver flowering stage	0.147
	SRR8316904	Silver flowering stage	0.519
	SRR8316905	Silver flowering stage	0.132
	SRR8316906	Gold flowering stage	0.543
	SRR8316907	Gold flowering stage	0.426
	SRR8316908	Gold flowering stage	0.215
SRP132670	SRR6706286	Control	0.408
	SRR6706287	Light intensity 50%	0.441
	SRR6706288	Light intensity 20%	0.363
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.576
	CNS0095593	Slightly white alabastrum(diploid) 2	0.802
	CNS0095594	Slightly white alabastrum(diploid) 3	0.210
	CNS0095595	Whole white alabastrum(diploid) 2	1.049
	CNS0095596	Whole white alabastrum(diploid) 3	0.671
	CNS0095597	Whole white alabastrum(diploid) 4	0.511
	CNS0095598	Silvery flower (diploied) 1	1.306
	CNS0095599	Silvery flower (diploied) 2	0.864
	CNS0095600	Silvery flower (diploied) 3	0.653
	CNS0095601	Golden flower (diploid) 1	0.277
	CNS0095602	Golden flower (diploid) 2	0.290
	CNS0095603	Golden flower (diploid) 3	0.297
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.519
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.031
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.320
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.410
	CNS0095610	Silvery flower (tetraploid) 1	0.721
	CNS0095611	Silvery flower (tetraploid) 2	0.331
	CNS0095612	Silvery flower (tetraploid) 3	0.610
	CNS0095613	Golden flower (tetraploid) 1	0.327
	CNS0095614	Golden flower (tetraploid) 2	0.679
	CNS0095615	Golden flower (tetraploid) 3	0.352
CRA001975	CRR073297	Stem 1	0.759
	CRR073298	Stem 2	0.417
	CRR073299	Stem 3	0.173
	CRR073300	Leaf 1	0.779
	CRR073301	Leaf 2	0.722
	CRR073302	Leaf 3	0.290
	CRR073303	Juvenile bud 1	0.452
	CRR073304	Juvenile bud 2	0.178
	CRR073305	Juvenile bud 3	0.519
	CRR073306	Third green 1	0.026
	CRR073307	Third green 2	0.118
	CRR073308	Third green 3	0.083
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.064
	CRR073312	Silver flowering 1	0.017
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.055
	CRR073316	Gold flowering 2	0.270
	CRR073317	Gold flowering 3	0.023
	CRR073318	Tawny withering 1	0.671
	CRR073319	Tawny withering 2	0.533
	CRR073320	Tawny withering 3	0.360