Gene detail

Detail information of GWHGAAZE018446

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011088396.1	PREDICTED: uncharacterized protein LOC105169638 isoform X1 [Sesamum indicum]
trEMBL	tr\|K4B3H6\|K4B3H6_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g109630.2.1}
TAIR10	AT2G21710.1	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19683221	19688420	+
GWHAAZE00000005	mRNA	19683221	19688420	+
GWHAAZE00000005	exon	19683221	19683473	+
GWHAAZE00000005	exon	19683536	19683803	+
GWHAAZE00000005	exon	19684967	19685375	+
GWHAAZE00000005	exon	19685449	19685664	+
GWHAAZE00000005	exon	19685766	19685824	+
GWHAAZE00000005	exon	19687023	19687328	+
GWHAAZE00000005	exon	19688126	19688420	+
GWHAAZE00000005	CDS	19683221	19683473	+
GWHAAZE00000005	CDS	19683536	19683803	+
GWHAAZE00000005	CDS	19684967	19685375	+
GWHAAZE00000005	CDS	19685449	19685664	+
GWHAAZE00000005	CDS	19685766	19685824	+
GWHAAZE00000005	CDS	19687023	19687328	+
GWHAAZE00000005	CDS	19688126	19688420	+

Transcript Sequence
>GWHTAAZE018468 ATGCTATCCCCTCAACTTCACCACTACCACTTCTCTATCATAACCCCTCACCACCTCAAACACCTCTCCTCCTCCCCTCTCCACACCACCAAAGCCCGCCGCCTCACCACTGCCGTTGCCGTCATCAACGACGATGACAAAATCACCACCCGAAGACAAAATTCCCCAATTCCCCTCCAGCTGAACCGAAATGAAGATGAGTCCAAGCTTCTCGAACTATCACTCGCTCGAAGAAGAACCCCCCAATTCCCAGAATCTTTTGACGGCGAGGATGAAGAGATGATAATTAGGGCAATTGAGATTCGAAGGAAGGTGACATTAGAGATTTTCGATGAGGCGATGAGGAGGGGGAAGTTTGGGATTACTTATTCTACTAATTTGGCTTCGAGGTTAGGGGAGTTTATTGATTATGTTATGATTCAAGCTGCGGAAATGAAAAAATTGCCGGAATTTTCACAAACGTCGTTCAATGATCGTGCTAAGGTTTTCATTGATAGCTCTAATGTTGTGCCAATTATCAGATGGTTGAAACACAATGCACTATCATATCCCCAAATTGCAAAGCTCATATGCATGTCGAGACGAGATCTTGGTTCCATAAACCGTATTGTTGAGTGGATGAAATCCATTCACGTGAAAGGGAGATTCGTGGGCATGGCATTGCCTAGAGCAGGAGGAAACGTATTCGAGCGAAGCACAGAAGAATTGGATGAGATTGTTGCGTATTTGGAAAGCAATGGAGTTAGAAGGGACTGGATGGGTTATGTTGTTAGCCGGTGCCCCGAATTACTGTCTTTTAGCATTGAAGAAATGAGGACCCGTTCTGAGTTCTACTTGGATATGGGTATGAATAAGAATGATTTCGGAACAATGGTTTATGACTATCCCAAAGTACTCGGCCATTTATCTCTAGAAGAGATGAGTCAAAAGGTTGGTTATTTGAAGGAGTTTGGCCTCAATAGCGAAGATGTTGGGAAATTATTGGCATTCAGGCCACATTTGATGGGTTGTAGCATTGAAGAAAGATGGAAGCCCCTTGTTAAGTACCTATACTACCTTGGTATTACACGAGATGGTATGAGGAGGATTCTTACCATCAAACCAATGGTTTTCTGTATTGACTTGGAGAGCAACATTGTTGCAAAGGTACAATTTTTACGAGACATAGGTGTTCAAGATGATGCCATTGGCAATGTGCTAGTCAGACCAACTGAAACTGGGCGGGCCCTCGTACAGGTGATATTCTTGTTGACGAGAGCTGGAGTCTCCCAGAAAGACGTTGGGAAAGTGATAGCTTTAGGACCTGAGCTATTGGGATGCAGCATAGCAAATAAACTGGATCCAAATTTGAAGTACTTCTTGTCCCTCGGCATTCCTCTTCGGTTAGTCGGTGAGATGATTGCTGATTTTCCTATGCTACTGCGCTACAATATAGACATCCTTCGTCCCAAGTACCGGTATCTACGTAGAACAATGGTCCGCCCTTTAAAGGATCTCACAGAGTTTCCAAGGTTCTTCAGCTATTCTCTCGATGGGCGAATAGTTCCTAGGCACAAGATTCTGGTGGAGAACCGGGTAAATTTTAAGCTTCGGTATATGCTGGCAACCTCAGATGAAGAGTTTGATCGGAGGGTTCGTGCTGCAGTTGAAAGGCGACAAAAATTTGAATCTGGTATCATGGATGAAGAAATATCCAAGTCCCAGATTGATGGTTCCTTAGAGAAAACACAAGTTAATTTTAGCGGAAATGAGGAATACCATGATTCTCAGACAATAGAGCGTGTTTTTTATTCATCCACTCAGTGA

Network for GWHGAAZE018446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	241	541	1.20E-59

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.163
	SRR3591706	second leaf	13.124
	SRR3591707	mature leaf	12.283
	SRR3591708	Shoot apex	8.921
	SRR3591709	Stem	1.982
	SRR3591710	White floral bud	5.338
	SRR3591711	White flower	3.763
	SRR3591712	Green floral bud	6.721
	SRR3591713	Yellow flower	3.135
SRP173429	SRR8316895	Juvenile bud stage	2.141
	SRR8316896	Juvenile bud stage	4.429
	SRR8316897	Juvenile bud stage	1.212
	SRR8316894	Third green stage	1.324
	SRR8316900	Third green stage	5.751
	SRR8316901	Third green stage	4.910
	SRR8316898	Complete white stage	1.178
	SRR8316899	Complete white stage	5.779
	SRR8316903	Complete white stage	1.620
	SRR8316902	Silver flowering stage	0.900
	SRR8316904	Silver flowering stage	1.275
	SRR8316905	Silver flowering stage	0.651
	SRR8316906	Gold flowering stage	1.529
	SRR8316907	Gold flowering stage	1.900
	SRR8316908	Gold flowering stage	1.519
SRP132670	SRR6706286	Control	3.462
	SRR6706287	Light intensity 50%	3.681
	SRR6706288	Light intensity 20%	4.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.820
	CNS0095593	Slightly white alabastrum(diploid) 2	2.008
	CNS0095594	Slightly white alabastrum(diploid) 3	1.443
	CNS0095595	Whole white alabastrum(diploid) 2	2.295
	CNS0095596	Whole white alabastrum(diploid) 3	1.890
	CNS0095597	Whole white alabastrum(diploid) 4	1.399
	CNS0095598	Silvery flower (diploied) 1	2.773
	CNS0095599	Silvery flower (diploied) 2	3.350
	CNS0095600	Silvery flower (diploied) 3	1.872
	CNS0095601	Golden flower (diploid) 1	2.493
	CNS0095602	Golden flower (diploid) 2	2.411
	CNS0095603	Golden flower (diploid) 3	2.138
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.465
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.023
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.282
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.552
	CNS0095610	Silvery flower (tetraploid) 1	3.233
	CNS0095611	Silvery flower (tetraploid) 2	4.767
	CNS0095612	Silvery flower (tetraploid) 3	1.945
	CNS0095613	Golden flower (tetraploid) 1	1.232
	CNS0095614	Golden flower (tetraploid) 2	2.410
	CNS0095615	Golden flower (tetraploid) 3	1.299
CRA001975	CRR073297	Stem 1	4.276
	CRR073298	Stem 2	4.271
	CRR073299	Stem 3	2.865
	CRR073300	Leaf 1	3.642
	CRR073301	Leaf 2	4.277
	CRR073302	Leaf 3	2.612
	CRR073303	Juvenile bud 1	3.300
	CRR073304	Juvenile bud 2	1.608
	CRR073305	Juvenile bud 3	3.003
	CRR073306	Third green 1	0.100
	CRR073307	Third green 2	0.151
	CRR073308	Third green 3	0.079
	CRR073309	Second white 1	0.228
	CRR073310	Second white 2	0.031
	CRR073311	Second white 3	0.320
	CRR073312	Silver flowering 1	0.039
	CRR073313	Silver flowering 2	0.530
	CRR073314	Silver flowering 3	0.056
	CRR073315	Gold flowering 1	24.258
	CRR073316	Gold flowering 2	35.785
	CRR073317	Gold flowering 3	19.154
	CRR073318	Tawny withering 1	1.819
	CRR073319	Tawny withering 2	1.038
	CRR073320	Tawny withering 3	1.137