Gene detail

Detail information of GWHGAAZE018447

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004245259.1	1.72133E-86	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Solanum lycopersicum]
Swissprot	tr\|P30155\|RK27_TOBAC	9E-27	50S ribosomal protein L27, chloroplastic (Precursor)
trEMBL	tr\|K4CM46\|K4CM46_SOLLC	8E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g068220.2.1}
TAIR10	AT5G15220.1	2E-53	Ribosomal protein L27 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19688770	19690189	-
GWHAAZE00000005	mRNA	19688770	19690189	-
GWHAAZE00000005	exon	19690108	19690189	-
GWHAAZE00000005	exon	19689878	19690002	-
GWHAAZE00000005	exon	19688770	19689306	-
GWHAAZE00000005	CDS	19690108	19690189	-
GWHAAZE00000005	CDS	19689878	19690002	-
GWHAAZE00000005	CDS	19689073	19689306	-
GWHAAZE00000005	three_prime_UTR	19688770	19689072	-

Transcript Sequence
>GWHTAAZE018469 ATGAATTTTGCAACGTCACTTTGTAGACGATTGAATCTGAGCGAGTTGATTACAAATGCTCCTGCATACAGCTCTGCTACTGATGTTACCGGAGGTGGACTGAGCTTGATGTTCAGACGCTGGGCTACCAAAAAGACAGCCGGGTCAACAAAAAATGGTCGGGACTCAAAACCGAAGAATCTAGGGGTTAAGAAATTTGGCGGAGAGAGGGTGATACCTGGGAACATTATTGTTCGGCAGAGGGGAACCCGCTTCCATCCAGGAAATTATGTAGGAATGGGGAAAGATCATACACTCTATGCCTTAAAAGAGGGATGTGTTAAGTTTGAAAAGCACAAGCTGAGCGGACGCAAGTGGATCCATGTTGAGCCCAAGGAAGGTCATGCACTTCACCCGGTCTACTCAAATATTGAATCTCCCAAGCTCAAGACAACTGCTTAAAGTTTCTTAGTTCTAGTTATTATCTAATGAGAGCTTTTATTGTTTGAAGGCGATTGGTGGTGATATCCATATGATGGACTCACACTACTTTGTGTTTCTTGTTAGTAGACATGGAAGATTAGTTTCATTTCAATGAGCTCAAACATTTGCAAGCCTAATTTATATATGGTGTTGCCAGTCAAATCCTTTGGTTAGGTTCTATATATTTCTTTGTTATTTTCCGAAATTTGACATTTTTTTTACATTATTTTACCATTTGTACTTTCTTTGGAAGGTAATCCTTGCATGTAACAAAACCGAAGT

Network for GWHGAAZE018447

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01016.20	Ribosomal_L27	42	122	2.30E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02899	RP-L27, MRPL27, rpmA	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.362
	SRR3591706	second leaf	38.751
	SRR3591707	mature leaf	36.518
	SRR3591708	Shoot apex	81.526
	SRR3591709	Stem	66.356
	SRR3591710	White floral bud	60.412
	SRR3591711	White flower	66.117
	SRR3591712	Green floral bud	83.400
	SRR3591713	Yellow flower	53.266
SRP173429	SRR8316895	Juvenile bud stage	34.000
	SRR8316896	Juvenile bud stage	42.829
	SRR8316897	Juvenile bud stage	23.531
	SRR8316894	Third green stage	20.382
	SRR8316900	Third green stage	59.757
	SRR8316901	Third green stage	58.973
	SRR8316898	Complete white stage	12.875
	SRR8316899	Complete white stage	53.415
	SRR8316903	Complete white stage	19.883
	SRR8316902	Silver flowering stage	12.590
	SRR8316904	Silver flowering stage	15.263
	SRR8316905	Silver flowering stage	8.387
	SRR8316906	Gold flowering stage	20.287
	SRR8316907	Gold flowering stage	25.090
	SRR8316908	Gold flowering stage	17.854
SRP132670	SRR6706286	Control	82.548
	SRR6706287	Light intensity 50%	84.620
	SRR6706288	Light intensity 20%	96.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.267
	CNS0095593	Slightly white alabastrum(diploid) 2	62.785
	CNS0095594	Slightly white alabastrum(diploid) 3	63.147
	CNS0095595	Whole white alabastrum(diploid) 2	62.419
	CNS0095596	Whole white alabastrum(diploid) 3	65.993
	CNS0095597	Whole white alabastrum(diploid) 4	50.366
	CNS0095598	Silvery flower (diploied) 1	46.050
	CNS0095599	Silvery flower (diploied) 2	42.223
	CNS0095600	Silvery flower (diploied) 3	34.827
	CNS0095601	Golden flower (diploid) 1	32.333
	CNS0095602	Golden flower (diploid) 2	32.331
	CNS0095603	Golden flower (diploid) 3	29.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.246
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.275
	CNS0095606	Slightly white alabastrum(tetraploid) 3	83.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.819
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.286
	CNS0095610	Silvery flower (tetraploid) 1	38.840
	CNS0095611	Silvery flower (tetraploid) 2	36.752
	CNS0095612	Silvery flower (tetraploid) 3	34.485
	CNS0095613	Golden flower (tetraploid) 1	30.907
	CNS0095614	Golden flower (tetraploid) 2	37.094
	CNS0095615	Golden flower (tetraploid) 3	18.707
CRA001975	CRR073297	Stem 1	63.029
	CRR073298	Stem 2	55.087
	CRR073299	Stem 3	72.768
	CRR073300	Leaf 1	55.967
	CRR073301	Leaf 2	59.564
	CRR073302	Leaf 3	78.288
	CRR073303	Juvenile bud 1	62.046
	CRR073304	Juvenile bud 2	67.713
	CRR073305	Juvenile bud 3	49.987
	CRR073306	Third green 1	21.233
	CRR073307	Third green 2	21.000
	CRR073308	Third green 3	20.136
	CRR073309	Second white 1	23.232
	CRR073310	Second white 2	20.617
	CRR073311	Second white 3	11.397
	CRR073312	Silver flowering 1	15.816
	CRR073313	Silver flowering 2	19.489
	CRR073314	Silver flowering 3	13.588
	CRR073315	Gold flowering 1	29.750
	CRR073316	Gold flowering 2	23.537
	CRR073317	Gold flowering 3	22.977
	CRR073318	Tawny withering 1	42.506
	CRR073319	Tawny withering 2	38.003
	CRR073320	Tawny withering 3	40.091