Gene detail

Detail information of GWHGAAZE018456

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631646.1	3.3192E-125	PREDICTED: uncharacterized protein LOC100853221 [Vitis vinifera]
trEMBL	tr\|D7TQ07\|D7TQ07_VITVI	1E-125	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32580.3}
TAIR10	AT3G18870.1	2E-89	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	19813381	19814202	+
GWHAAZE00000005	mRNA	19813381	19814202	+
GWHAAZE00000005	exon	19813381	19814202	+
GWHAAZE00000005	CDS	19813381	19814202	+

Transcript Sequence
>GWHTAAZE018478 ATGCTTCGCTCCTATATCCCCACACTCTGCAAATTCCTTCCAAACACAAACCCTAATTTCCATTCTCCTCCTCATCGCCTCAAATTCAACACCTCTCACCGTGAAAATCTCCGGTACCTGAAAACCCTCGGCGTAATCCACCCCCACACCAAAACCCCCAAATCCCCGGAAACCCTAGCCCACATCCTCTCCACCGTCAATTACCTCAAATCCAAGGGCTTCTCAGACCCCAATTTCTCCAGACTCGCCTTCCTCTGCCCTAATCTCTTCTCCCCTGAATTCGACCCCACTTCTCTCGAACCAGTTTTCGATTTCTTAACCTCCGATTTATCCGCATCAGTCGAAGAATCGAGCGGTTTAGTTCTCAGATGTCCGAACATTCTCGAATCAAACGTGGAGTTTTGTTTAAGGCCAACACTAACTTATTTGAGAAAATTGGGGATTGAGAAATTGAACACTCCGACTACTTTAAATTCGCATTTGTTGAATACTAGGGTTGATAAATTGAAGGAGAAGGTGAGGTTCTTGCGGAGTTTGGGGTTTTCGTATGAGGATTCGGCTAGGGTTTGTGGGAGATTGCCGGCGATATTTGGGTACAGTATTGAGAATAATTTGAGGCCAAAGTTTGAGTATTTGGTGAGGGATATGAAAAGGAAAGGTGTTGAGGAAGTGAAGGGGTTTCCTCAGTACTTTGCTTTCAGTTTGGAGAGGAGGATAAGGCCCAGGCATTTGCATTTGAAGCAGAGGAAGGTTGACAAGGAAATTCCTTTGAAGAGAATGTTGATGTGGGGTGATGAAAGATTTTATGCCAAGTGGAAATGA

Network for GWHGAAZE018456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	113	268	4.80E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.083
	SRR3591706	second leaf	17.432
	SRR3591707	mature leaf	22.324
	SRR3591708	Shoot apex	11.720
	SRR3591709	Stem	3.974
	SRR3591710	White floral bud	14.270
	SRR3591711	White flower	19.963
	SRR3591712	Green floral bud	11.579
	SRR3591713	Yellow flower	26.272
SRP173429	SRR8316895	Juvenile bud stage	3.522
	SRR8316896	Juvenile bud stage	2.728
	SRR8316897	Juvenile bud stage	1.019
	SRR8316894	Third green stage	1.846
	SRR8316900	Third green stage	6.613
	SRR8316901	Third green stage	4.657
	SRR8316898	Complete white stage	2.673
	SRR8316899	Complete white stage	5.545
	SRR8316903	Complete white stage	3.752
	SRR8316902	Silver flowering stage	3.182
	SRR8316904	Silver flowering stage	5.605
	SRR8316905	Silver flowering stage	3.327
	SRR8316906	Gold flowering stage	9.583
	SRR8316907	Gold flowering stage	7.391
	SRR8316908	Gold flowering stage	9.680
SRP132670	SRR6706286	Control	11.390
	SRR6706287	Light intensity 50%	9.508
	SRR6706288	Light intensity 20%	10.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.566
	CNS0095593	Slightly white alabastrum(diploid) 2	3.048
	CNS0095594	Slightly white alabastrum(diploid) 3	3.976
	CNS0095595	Whole white alabastrum(diploid) 2	3.594
	CNS0095596	Whole white alabastrum(diploid) 3	3.763
	CNS0095597	Whole white alabastrum(diploid) 4	2.414
	CNS0095598	Silvery flower (diploied) 1	4.638
	CNS0095599	Silvery flower (diploied) 2	3.307
	CNS0095600	Silvery flower (diploied) 3	10.131
	CNS0095601	Golden flower (diploid) 1	7.029
	CNS0095602	Golden flower (diploid) 2	10.372
	CNS0095603	Golden flower (diploid) 3	10.296
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.436
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.638
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.302
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.777
	CNS0095610	Silvery flower (tetraploid) 1	11.879
	CNS0095611	Silvery flower (tetraploid) 2	11.034
	CNS0095612	Silvery flower (tetraploid) 3	9.696
	CNS0095613	Golden flower (tetraploid) 1	9.806
	CNS0095614	Golden flower (tetraploid) 2	11.218
	CNS0095615	Golden flower (tetraploid) 3	15.184
CRA001975	CRR073297	Stem 1	8.775
	CRR073298	Stem 2	8.348
	CRR073299	Stem 3	8.391
	CRR073300	Leaf 1	5.621
	CRR073301	Leaf 2	6.567
	CRR073302	Leaf 3	3.582
	CRR073303	Juvenile bud 1	5.671
	CRR073304	Juvenile bud 2	4.988
	CRR073305	Juvenile bud 3	4.600
	CRR073306	Third green 1	3.779
	CRR073307	Third green 2	3.676
	CRR073308	Third green 3	2.578
	CRR073309	Second white 1	6.566
	CRR073310	Second white 2	6.812
	CRR073311	Second white 3	7.801
	CRR073312	Silver flowering 1	6.250
	CRR073313	Silver flowering 2	5.521
	CRR073314	Silver flowering 3	8.435
	CRR073315	Gold flowering 1	44.356
	CRR073316	Gold flowering 2	52.286
	CRR073317	Gold flowering 3	59.269
	CRR073318	Tawny withering 1	5.699
	CRR073319	Tawny withering 2	1.750
	CRR073320	Tawny withering 3	4.122