Detail information of GWHGAAZE018472


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97081.16.4906E-151unnamed protein product [Coffea canephora]
Swissprottr|O23207|FQRL2_ARATH7E-131Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 {ECO:0000305}
trEMBLtr|A0A068TLH0|A0A068TLH0_COFCA2E-151Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97081.1}
TAIR10AT4G36750.12E-97Quinone reductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2000244620005084+
GWHAAZE00000005mRNA2000244620005084+
GWHAAZE00000005exon2000244620003228+
GWHAAZE00000005exon2000453120005084+
GWHAAZE00000005five_prime_UTR2000244620002671+
GWHAAZE00000005CDS2000267220003228+
GWHAAZE00000005CDS2000453120004789+
GWHAAZE00000005three_prime_UTR2000479020005084+
Transcript Sequence

Network for GWHGAAZE018472

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03358.16FMN_red1252031.00E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03809wrbA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName
GO:0003955molecular_functionNAD(P)H dehydrogenase (quinone) activity
GO:0010181molecular_functionFMN binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf47.675
SRR3591706second leaf11.847
SRR3591707mature leaf11.449
SRR3591708Shoot apex21.563
SRR3591709Stem69.539
SRR3591710White floral bud31.519
SRR3591711White flower34.218
SRR3591712Green floral bud18.184
SRR3591713Yellow flower27.955
SRP173429 SRR8316895Juvenile bud stage 35.553
SRR8316896Juvenile bud stage 38.794
SRR8316897Juvenile bud stage 26.811
SRR8316894Third green stage 6.467
SRR8316900Third green stage 13.404
SRR8316901Third green stage 24.134
SRR8316898Complete white stage 6.862
SRR8316899Complete white stage 48.931
SRR8316903Complete white stage 13.142
SRR8316902Silver flowering stage12.237
SRR8316904Silver flowering stage9.409
SRR8316905Silver flowering stage5.219
SRR8316906Gold flowering stage 16.584
SRR8316907Gold flowering stage 13.895
SRR8316908Gold flowering stage 18.064
SRP132670SRR6706286Control11.918
SRR6706287Light intensity 50%14.184
SRR6706288Light intensity 20%13.197
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.342
CNS0095593Slightly white alabastrum(diploid) 241.774
CNS0095594Slightly white alabastrum(diploid) 331.893
CNS0095595Whole white alabastrum(diploid) 227.941
CNS0095596Whole white alabastrum(diploid) 37.872
CNS0095597Whole white alabastrum(diploid) 423.626
CNS0095598Silvery flower (diploied) 146.398
CNS0095599Silvery flower (diploied) 246.152
CNS0095600Silvery flower (diploied) 328.327
CNS0095601Golden flower (diploid) 157.086
CNS0095602Golden flower (diploid) 244.695
CNS0095603Golden flower (diploid) 347.282
CNS0095604Slightly white alabastrum(tetraploid) 19.492
CNS0095605Slightly white alabastrum(tetraploid) 29.877
CNS0095606Slightly white alabastrum(tetraploid) 315.287
CNS0095607Whole white alabastrum(tetraploid) 17.088
CNS0095608Whole white alabastrum(tetraploid) 26.416
CNS0095609Whole white alabastrum(tetraploid) 39.996
CNS0095610Silvery flower (tetraploid) 113.262
CNS0095611Silvery flower (tetraploid) 29.705
CNS0095612Silvery flower (tetraploid) 311.644
CNS0095613Golden flower (tetraploid) 19.671
CNS0095614Golden flower (tetraploid) 29.753
CNS0095615Golden flower (tetraploid) 317.784
CRA001975CRR073297Stem 118.256
CRR073298Stem 215.685
CRR073299Stem 316.525
CRR073300Leaf 122.157
CRR073301Leaf 228.353
CRR073302Leaf 318.250
CRR073303Juvenile bud 116.923
CRR073304Juvenile bud 221.598
CRR073305Juvenile bud 330.589
CRR073306Third green 134.043
CRR073307Third green 247.174
CRR073308Third green 338.115
CRR073309Second white 116.387
CRR073310Second white 214.916
CRR073311Second white 313.462
CRR073312Silver flowering 132.324
CRR073313Silver flowering 240.525
CRR073314Silver flowering 339.598
CRR073315Gold flowering 130.921
CRR073316Gold flowering 239.899
CRR073317Gold flowering 331.264
CRR073318Tawny withering 150.786
CRR073319Tawny withering 274.258
CRR073320Tawny withering 368.166