Detail information of GWHGAAZE018473


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003631628.14.6695E-111PREDICTED: NEDD8-conjugating enzyme Ubc12 [Vitis vinifera]
Swissprottr|Q9SDY5|RCE1_ARATH2E-103NEDD8-conjugating enzyme Ubc12
trEMBLtr|A5AHT5|A5AHT5_VITVI2E-111Putative uncharacterized protein {ECO:0000313|EMBL:CAN82178.1}
TAIR10AT4G36800.25E-82RUB1 conjugating enzyme 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2000648320008141-
GWHAAZE00000005mRNA2000648320008141-
GWHAAZE00000005exon2000648320006620-
GWHAAZE00000005exon2000672620006842-
GWHAAZE00000005exon2000694220007020-
GWHAAZE00000005exon2000735520007517-
GWHAAZE00000005exon2000803920008141-
GWHAAZE00000005CDS2000803920008141-
GWHAAZE00000005CDS2000735520007517-
GWHAAZE00000005CDS2000694220007020-
GWHAAZE00000005CDS2000672620006842-
GWHAAZE00000005CDS2000648320006620-
Transcript Sequence

Network for GWHGAAZE018473

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con651842.30E-38
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10579UBE2M, UBC12 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf137.450
SRR3591706second leaf77.341
SRR3591707mature leaf79.814
SRR3591708Shoot apex110.283
SRR3591709Stem138.354
SRR3591710White floral bud157.463
SRR3591711White flower190.876
SRR3591712Green floral bud117.644
SRR3591713Yellow flower240.035
SRP173429 SRR8316895Juvenile bud stage 45.058
SRR8316896Juvenile bud stage 52.018
SRR8316897Juvenile bud stage 25.393
SRR8316894Third green stage 24.182
SRR8316900Third green stage 95.102
SRR8316901Third green stage 86.445
SRR8316898Complete white stage 67.305
SRR8316899Complete white stage 125.211
SRR8316903Complete white stage 91.783
SRR8316902Silver flowering stage71.343
SRR8316904Silver flowering stage105.961
SRR8316905Silver flowering stage48.953
SRR8316906Gold flowering stage 145.785
SRR8316907Gold flowering stage 136.101
SRR8316908Gold flowering stage 147.738
SRP132670SRR6706286Control29.344
SRR6706287Light intensity 50%30.191
SRR6706288Light intensity 20%33.091
CNP0000432CNS0095592Slightly white alabastrum(diploid) 158.603
CNS0095593Slightly white alabastrum(diploid) 270.224
CNS0095594Slightly white alabastrum(diploid) 350.394
CNS0095595Whole white alabastrum(diploid) 269.612
CNS0095596Whole white alabastrum(diploid) 360.637
CNS0095597Whole white alabastrum(diploid) 462.166
CNS0095598Silvery flower (diploied) 183.716
CNS0095599Silvery flower (diploied) 290.380
CNS0095600Silvery flower (diploied) 3158.489
CNS0095601Golden flower (diploid) 1122.339
CNS0095602Golden flower (diploid) 2151.377
CNS0095603Golden flower (diploid) 3146.157
CNS0095604Slightly white alabastrum(tetraploid) 159.706
CNS0095605Slightly white alabastrum(tetraploid) 252.867
CNS0095606Slightly white alabastrum(tetraploid) 369.445
CNS0095607Whole white alabastrum(tetraploid) 144.534
CNS0095608Whole white alabastrum(tetraploid) 252.202
CNS0095609Whole white alabastrum(tetraploid) 367.795
CNS0095610Silvery flower (tetraploid) 1161.482
CNS0095611Silvery flower (tetraploid) 2174.271
CNS0095612Silvery flower (tetraploid) 3174.910
CNS0095613Golden flower (tetraploid) 1154.886
CNS0095614Golden flower (tetraploid) 2149.998
CNS0095615Golden flower (tetraploid) 3255.358
CRA001975CRR073297Stem 137.765
CRR073298Stem 233.174
CRR073299Stem 333.584
CRR073300Leaf 142.126
CRR073301Leaf 236.089
CRR073302Leaf 348.727
CRR073303Juvenile bud 145.684
CRR073304Juvenile bud 251.876
CRR073305Juvenile bud 343.704
CRR073306Third green 152.025
CRR073307Third green 259.975
CRR073308Third green 347.711
CRR073309Second white 173.691
CRR073310Second white 271.815
CRR073311Second white 351.097
CRR073312Silver flowering 169.319
CRR073313Silver flowering 263.755
CRR073314Silver flowering 360.143
CRR073315Gold flowering 146.399
CRR073316Gold flowering 255.405
CRR073317Gold flowering 336.654
CRR073318Tawny withering 177.463
CRR073319Tawny withering 277.377
CRR073320Tawny withering 375.034