Detail information of GWHGAAZE018483


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABI64152.10hydroxymethylbutenyl diphosphate reductase [Camptotheca acuminata]
Swissprottr|Q94B35|ISPH_ARATH04-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic (Precursor)
trEMBLtr|D2CFT5|D2CFT5_CAMAC0Hydroxymethylbutenyl diphosphate reductase {ECO:0000313|EMBL:ABI64152.1}
TAIR10AT4G34350.104-hydroxy-3-methylbut-2-enyl diphosphate reductase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2017901020183072-
GWHAAZE00000005mRNA2017901020183072-
GWHAAZE00000005exon2017901020179075-
GWHAAZE00000005exon2017919120179277-
GWHAAZE00000005exon2017991620180101-
GWHAAZE00000005exon2018020820180302-
GWHAAZE00000005exon2018038420180489-
GWHAAZE00000005exon2018096420181095-
GWHAAZE00000005exon2018121320181392-
GWHAAZE00000005exon2018187720182073-
GWHAAZE00000005exon2018281720183072-
GWHAAZE00000005CDS2018281720183072-
GWHAAZE00000005CDS2018187720182073-
GWHAAZE00000005CDS2018121320181392-
GWHAAZE00000005CDS2018096420181095-
GWHAAZE00000005CDS2018038420180489-
GWHAAZE00000005CDS2018020820180302-
GWHAAZE00000005CDS2017991620180101-
GWHAAZE00000005CDS2017919120179277-
GWHAAZE00000005CDS2017901020179075-
Transcript Sequence

Network for GWHGAAZE018483

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02401.19LYTB1064202.30E-83
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03527ispH, lytB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
GO:0050992biological_processdimethylallyl diphosphate biosynthetic process
GO:0046872molecular_functionmetal ion binding
GO:0051745molecular_function4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE018483.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30500100015002000250030003500400045005000550060006500Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf120.646
SRR3591706second leaf784.796
SRR3591707mature leaf926.233
SRR3591708Shoot apex326.262
SRR3591709Stem110.661
SRR3591710White floral bud1190.883
SRR3591711White flower1115.586
SRR3591712Green floral bud253.369
SRR3591713Yellow flower732.547
SRP173429 SRR8316895Juvenile bud stage 209.948
SRR8316896Juvenile bud stage 205.100
SRR8316897Juvenile bud stage 111.301
SRR8316894Third green stage 64.657
SRR8316900Third green stage 205.232
SRR8316901Third green stage 202.744
SRR8316898Complete white stage 425.924
SRR8316899Complete white stage 325.497
SRR8316903Complete white stage 491.128
SRR8316902Silver flowering stage1551.746
SRR8316904Silver flowering stage2120.443
SRR8316905Silver flowering stage1213.995
SRR8316906Gold flowering stage 3075.529
SRR8316907Gold flowering stage 2569.304
SRR8316908Gold flowering stage 2678.707
SRP132670SRR6706286Control204.603
SRR6706287Light intensity 50%208.529
SRR6706288Light intensity 20%209.320
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1247.690
CNS0095593Slightly white alabastrum(diploid) 2215.501
CNS0095594Slightly white alabastrum(diploid) 3255.225
CNS0095595Whole white alabastrum(diploid) 2369.625
CNS0095596Whole white alabastrum(diploid) 3126.846
CNS0095597Whole white alabastrum(diploid) 4272.048
CNS0095598Silvery flower (diploied) 1528.858
CNS0095599Silvery flower (diploied) 2660.081
CNS0095600Silvery flower (diploied) 32606.986
CNS0095601Golden flower (diploid) 1755.762
CNS0095602Golden flower (diploid) 21689.485
CNS0095603Golden flower (diploid) 31641.071
CNS0095604Slightly white alabastrum(tetraploid) 1229.641
CNS0095605Slightly white alabastrum(tetraploid) 2288.042
CNS0095606Slightly white alabastrum(tetraploid) 3635.886
CNS0095607Whole white alabastrum(tetraploid) 1151.391
CNS0095608Whole white alabastrum(tetraploid) 2125.431
CNS0095609Whole white alabastrum(tetraploid) 3274.461
CNS0095610Silvery flower (tetraploid) 12582.899
CNS0095611Silvery flower (tetraploid) 23192.422
CNS0095612Silvery flower (tetraploid) 32478.479
CNS0095613Golden flower (tetraploid) 13597.528
CNS0095614Golden flower (tetraploid) 23088.360
CNS0095615Golden flower (tetraploid) 35911.933
CRA001975CRR073297Stem 1201.274
CRR073298Stem 2198.720
CRR073299Stem 3209.182
CRR073300Leaf 1170.191
CRR073301Leaf 2131.739
CRR073302Leaf 3170.160
CRR073303Juvenile bud 1195.316
CRR073304Juvenile bud 2264.807
CRR073305Juvenile bud 3173.925
CRR073306Third green 12863.571
CRR073307Third green 21887.240
CRR073308Third green 32135.171
CRR073309Second white 12139.636
CRR073310Second white 22326.718
CRR073311Second white 32039.890
CRR073312Silver flowering 1879.209
CRR073313Silver flowering 2572.327
CRR073314Silver flowering 3669.755
CRR073315Gold flowering 1396.839
CRR073316Gold flowering 2529.104
CRR073317Gold flowering 3379.208
CRR073318Tawny withering 1247.378
CRR073319Tawny withering 2197.862
CRR073320Tawny withering 3398.523