Gene detail

Detail information of GWHGAAZE018489

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO97095.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q949V6\|ARI1_ARATH	Probable E3 ubiquitin-protein ligase ARI1
trEMBL	tr\|A0A068TL85\|A0A068TL85_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97095.1}
TAIR10	AT4G34370.1	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20252104	20255551	+
GWHAAZE00000005	mRNA	20252104	20255551	+
GWHAAZE00000005	exon	20252104	20252209	+
GWHAAZE00000005	exon	20253177	20253308	+
GWHAAZE00000005	exon	20253584	20254064	+
GWHAAZE00000005	exon	20254232	20254291	+
GWHAAZE00000005	exon	20254999	20255551	+
GWHAAZE00000005	CDS	20252104	20252209	+
GWHAAZE00000005	CDS	20253177	20253308	+
GWHAAZE00000005	CDS	20253584	20254064	+
GWHAAZE00000005	CDS	20254232	20254291	+
GWHAAZE00000005	CDS	20254999	20255551	+

Transcript Sequence
>GWHTAAZE018511 ATGGAAGGTTGTACGGGTGGGGAAGAAGATTATTATTCATCTGATCGAGACTCCCTTGATGGACTGGATAACGAGGAGTCTGATTCCCAGTGGGTCCCTCCCAAAGGTGTGCCTGTCGTTGAGCATTATGATCTGGACTCACCGTCGTCTTCTACCGTAATGTGCAATATCTGCATTGAAGATGTACCTAGTAGCGAGGCGACAAAAATGGATTGTGGCCATTGCTTTTGCAACAATTGTTGGACAGAGCATTTTATTGTAAAGATAAATGAGGGCCAGAGTAAGCGTATCAGGTGCATGGCTCATAAATGCTTTGCCATTTGTGATGAAGACATCATCAGAAGCCTAGTTAGTAGAAGGCACCCTGATTTAGCTGAAAAATTTGAGCGTTTCCTTCTCGAGTCCTATATTGAGGACAATAAAATGGTAAAATGGTGCCCTAGTACACCCCATTGTGGGAATGCGATACGCGTGGAAGATGATGAATTTTGCGAGGTAGAATGTTCATGTGGGTTACAGTTCTGTTTCAGTTGCTTATCTCAAGCACATTCCCCTTGTTCATGTTTGATGTGGGAACTGTGGACCAAAAAATGCCGAGATGAATCAGAAACAGTAAATTGGATTACAGTTCATACAAAGCCTTGTCCAAAGTGTCACAAACCTGTTGAGAAGAATGGTGGATGCAACCTAGTGAGCTGCATTTGTGGGCAAGCATTTTGTTTTGTTCATCTTGTTCTTTCCTACTCCCCTTCTCTGTCCTTTACTTTGATAGGTGCTAGTTGGCTGTGTGGTGGAGCAACTGGGCGGGATCATACTTGGTCAAGTATTGCTGGTCACAGTTGTGGCCGCTATAAGGAAGACAAAGAGAAAAATTCAGAGCGTGCAAAGCGGGACCTCTATAGGTACATGCACTATCACAATCGTTACAAAGCTCATACAGATTCGTTCAAGCAAGAATCCAGACTGAGGGAGACTATAAGAGAGAAGGTCTCAAATTTGGAAGGAAAAGATTCTAGATTGAGAGATTTTAGCTGGGTTACAAATGGACTTTACAGACTCTTCAGATCGAGGAGGGCTCTTTCGTATTCATACCCATTTGCCTTTTATATGTTTGGCGAAGACTTGTTTAAGGACGAGATGACAGAAAAGGAAAGGGAAATAAAGCAGCATTTATTTGAGGACCAGCAGCAGCAGCTTGAGGCAAATGTTGAGAAGCTATCTAAGTTTATTGAGGAGCCATTTCACCAGTATGGCGAGGACAGAGTTATGGAGATAAGGATGCAAGTCATCAATCTCTGCGTGATCACTGACAACCTCTGCAAGAAAATGTGA

Network for GWHGAAZE018489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01485.22	IBR	126	188	5.50E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.794
	SRR3591706	second leaf	11.264
	SRR3591707	mature leaf	16.006
	SRR3591708	Shoot apex	13.707
	SRR3591709	Stem	20.053
	SRR3591710	White floral bud	26.843
	SRR3591711	White flower	31.449
	SRR3591712	Green floral bud	19.203
	SRR3591713	Yellow flower	22.901
SRP173429	SRR8316895	Juvenile bud stage	8.404
	SRR8316896	Juvenile bud stage	10.751
	SRR8316897	Juvenile bud stage	5.688
	SRR8316894	Third green stage	5.245
	SRR8316900	Third green stage	12.139
	SRR8316901	Third green stage	12.887
	SRR8316898	Complete white stage	9.256
	SRR8316899	Complete white stage	18.276
	SRR8316903	Complete white stage	15.632
	SRR8316902	Silver flowering stage	11.052
	SRR8316904	Silver flowering stage	16.561
	SRR8316905	Silver flowering stage	7.619
	SRR8316906	Gold flowering stage	28.191
	SRR8316907	Gold flowering stage	25.087
	SRR8316908	Gold flowering stage	28.712
SRP132670	SRR6706286	Control	11.807
	SRR6706287	Light intensity 50%	12.898
	SRR6706288	Light intensity 20%	12.694
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.038
	CNS0095593	Slightly white alabastrum(diploid) 2	5.526
	CNS0095594	Slightly white alabastrum(diploid) 3	7.617
	CNS0095595	Whole white alabastrum(diploid) 2	6.547
	CNS0095596	Whole white alabastrum(diploid) 3	5.913
	CNS0095597	Whole white alabastrum(diploid) 4	6.396
	CNS0095598	Silvery flower (diploied) 1	11.925
	CNS0095599	Silvery flower (diploied) 2	6.965
	CNS0095600	Silvery flower (diploied) 3	26.565
	CNS0095601	Golden flower (diploid) 1	9.747
	CNS0095602	Golden flower (diploid) 2	25.540
	CNS0095603	Golden flower (diploid) 3	22.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.169
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.678
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.500
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.977
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.773
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.763
	CNS0095610	Silvery flower (tetraploid) 1	26.753
	CNS0095611	Silvery flower (tetraploid) 2	24.002
	CNS0095612	Silvery flower (tetraploid) 3	32.168
	CNS0095613	Golden flower (tetraploid) 1	17.436
	CNS0095614	Golden flower (tetraploid) 2	21.185
	CNS0095615	Golden flower (tetraploid) 3	26.628
CRA001975	CRR073297	Stem 1	15.773
	CRR073298	Stem 2	12.970
	CRR073299	Stem 3	14.291
	CRR073300	Leaf 1	11.330
	CRR073301	Leaf 2	9.338
	CRR073302	Leaf 3	11.771
	CRR073303	Juvenile bud 1	9.238
	CRR073304	Juvenile bud 2	11.155
	CRR073305	Juvenile bud 3	14.857
	CRR073306	Third green 1	24.519
	CRR073307	Third green 2	17.276
	CRR073308	Third green 3	18.860
	CRR073309	Second white 1	24.996
	CRR073310	Second white 2	31.054
	CRR073311	Second white 3	28.882
	CRR073312	Silver flowering 1	26.670
	CRR073313	Silver flowering 2	34.034
	CRR073314	Silver flowering 3	23.040
	CRR073315	Gold flowering 1	4.815
	CRR073316	Gold flowering 2	11.154
	CRR073317	Gold flowering 3	8.203
	CRR073318	Tawny withering 1	12.397
	CRR073319	Tawny withering 2	8.770
	CRR073320	Tawny withering 3	16.049