Gene detail

Detail information of GWHGAAZE018498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281201.1	0	PREDICTED: allene oxide synthase-like [Vitis vinifera]
Swissprot	tr\|Q0PHS9\|DES_CAPAN	0	9-divinyl ether synthase
trEMBL	tr\|F6HQI4\|F6HQI4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56941.1}
TAIR10	AT5G42650.1	8E-149	allene oxide synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20324899	20326344	-
GWHAAZE00000005	mRNA	20324899	20326344	-
GWHAAZE00000005	exon	20324899	20326344	-
GWHAAZE00000005	CDS	20324899	20326344	-

Transcript Sequence
>GWHTAAZE018520 ATGCAATCATCTTCTACCCCCTCCAACAATGACCAATCAAAGCTCCCTCTAAAACAAGTCCCCGGAACTTATGGCATCCCCTTCATCGGTCCGATCAAAGACAGGCGTGATTACTTCTACAACCAAGGCGAGGACGCCTTCTTTCGTACACGTATCCAAAAATACAAATCCACCGTCTTTAGAACCAACATGCCCCCGGGGCCCTTCATCTCCTCCAACTCTAAAGTAGTCGCTGTTCTTGATGCTGCTAGCTTCCCCATCCTCTTCGACACCTCAAAAGTCGAGAAGAAAAACGTCCTTGACGGCACTTACATGCCCTCCACTGCCTTCTTCGGGGGCTACCGCCCTTGCGCCTTCCTCGATCCCTCCGAACCAAGTCACACCGCCCTCAAAAGCTTTTTCCTGAAAGTAATCGCCTCCTTGCATAATAAACTCATTCCTTCTTTCCGTAACAGCTTATCCGATTTCTTTACCAACGTCGAAGACGAACTTACAGACAATTCAAAAGCTGATTTCAACGCACTCAGCGACAACATGTCGTTCGACTTCGTGTTCCGTTTGTTTTGTGACAAGAGTCCAACGGAGACAGTTCTCGGATCTAAAGGACCAGATACTTCTACCAAATGGCTCGCTCTTCAGCTTGTGCCATTAATGACTCTCGGAATCAACTACTTACCGAACTTCATCGAAGATCTGTTCCTCCACACATTCTCTCTCCCTTTTTTCTTAGTAAAATCCGATTACAAGAAGCTCTACAACGCTTTCTACACATCTGCAAGTTCAATTCTAGATGACGCTGAGAAGAATGGAATCAAACGAGACGAAGCTTGTCATAATCTCGTATTTCTAGCGGAGTTCAATGCTTTTGGGGGAATGAAAACTTTATTTCCCGCACTGATAAAGTGGGTGGGATCAGCAGGTGAGAGTTTGCACGCTCGACTCGTTAACGAAATCAGGTCAGTTGTCAAATCTGAAGGCGGAGTCACGTTATCCGCACTGGAAAAAATGACACTCACTAAATCAGTAGTCTACGAAGCATTAAGGATCGAACCACCGGTACCCTACCAGTACGGGAAGGCAAAGGAAGACATAGTTGTTAACAGCCACGATGCGGCCTACTGCATCAAAAAAGGCGAAATGATCTTCGGATTTCAGCCATTGGCCACGAAAGATCCCAAGGTTTTCAAAAATCCGGAGGAGTTTGTGGGAGATAGATTCGTTGGTGAGGGTGAAGAGTTGTTGAAGTATGTGTACTGGTCGAATGGAAGGGAGACAGAGGATCCGACGGCTGAGAATAAGCAGTGTCCGGGGAAGGATATTGTGTTGCTGTTGTCCAGGGTAATGTTGGTGGAGTTTTTTCTCCGGTATGATACATTCACAGTTGAGAGTTCGAAGATTATGCTGGGGTCGGCGGTGACTATCACGTCGGTGACCAAGGCCGATTGA

Network for GWHGAAZE018498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	311	412	2.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01723	AOS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding
GO:0004497	molecular_function	monooxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.069
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.416
	SRR3591711	White flower	1.939
	SRR3591712	Green floral bud	0.193
	SRR3591713	Yellow flower	67.971
SRP173429	SRR8316895	Juvenile bud stage	0.077
	SRR8316896	Juvenile bud stage	0.110
	SRR8316897	Juvenile bud stage	0.103
	SRR8316894	Third green stage	0.047
	SRR8316900	Third green stage	0.288
	SRR8316901	Third green stage	0.402
	SRR8316898	Complete white stage	0.413
	SRR8316899	Complete white stage	0.178
	SRR8316903	Complete white stage	0.972
	SRR8316902	Silver flowering stage	0.440
	SRR8316904	Silver flowering stage	0.341
	SRR8316905	Silver flowering stage	0.400
	SRR8316906	Gold flowering stage	5.760
	SRR8316907	Gold flowering stage	3.029
	SRR8316908	Gold flowering stage	2.730
SRP132670	SRR6706286	Control	0.423
	SRR6706287	Light intensity 50%	0.221
	SRR6706288	Light intensity 20%	0.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.257
	CNS0095593	Slightly white alabastrum(diploid) 2	0.030
	CNS0095594	Slightly white alabastrum(diploid) 3	0.280
	CNS0095595	Whole white alabastrum(diploid) 2	0.118
	CNS0095596	Whole white alabastrum(diploid) 3	0.630
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.312
	CNS0095599	Silvery flower (diploied) 2	0.670
	CNS0095600	Silvery flower (diploied) 3	0.666
	CNS0095601	Golden flower (diploid) 1	1.594
	CNS0095602	Golden flower (diploid) 2	8.854
	CNS0095603	Golden flower (diploid) 3	7.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.187
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.322
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.113
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.188
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.186
	CNS0095611	Silvery flower (tetraploid) 2	0.203
	CNS0095612	Silvery flower (tetraploid) 3	0.199
	CNS0095613	Golden flower (tetraploid) 1	1.968
	CNS0095614	Golden flower (tetraploid) 2	0.658
	CNS0095615	Golden flower (tetraploid) 3	2.095
CRA001975	CRR073297	Stem 1	0.371
	CRR073298	Stem 2	0.091
	CRR073299	Stem 3	1.042
	CRR073300	Leaf 1	0.381
	CRR073301	Leaf 2	0.361
	CRR073302	Leaf 3	0.549
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.037
	CRR073305	Juvenile bud 3	0.043
	CRR073306	Third green 1	2.223
	CRR073307	Third green 2	1.858
	CRR073308	Third green 3	1.469
	CRR073309	Second white 1	3.206
	CRR073310	Second white 2	3.382
	CRR073311	Second white 3	7.889
	CRR073312	Silver flowering 1	22.382
	CRR073313	Silver flowering 2	12.875
	CRR073314	Silver flowering 3	24.272
	CRR073315	Gold flowering 1	0.155
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.154
	CRR073319	Tawny withering 2	0.244
	CRR073320	Tawny withering 3	0.462