Gene detail

Detail information of GWHGAAZE018499

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97111.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FE91\|C3H62_ARATH	1E-10	Zinc finger CCCH domain-containing protein 62
trEMBL	tr\|A0A068TLK6\|A0A068TLK6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97111.1}
TAIR10	AT3G18950.1	9E-134	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20368058	20369203	+
GWHAAZE00000005	mRNA	20368058	20369203	+
GWHAAZE00000005	exon	20368058	20369203	+
GWHAAZE00000005	CDS	20368058	20369203	+

Transcript Sequence
>GWHTAAZE018521 ATGTCTCCTTTCCACAACTCCTCTCCTTATATCAATTCCCCTTGGATTCACACTACCCCGCTTAGTCCCTTAAACGACGTCACCTATTTGCATCACAGACTCATCGGTTCCCTTGTACGCGAAGAAGGCCATATATACTCTCTTGCCGCCTCCGGTGACTTGCTATTCACCGGATCCGATAGCAGAAACATTAGAGTCTGGAAGAACTTGAAAGAATTCTCCGGTTTCAAATCCAACAGTGGATTAGTCAAAGCAATTGTTGTATCCGGCAACAGGATTTTCACCGGCCATCAGGACGGCAAAATCCGAGTATGGAGATTTTTGTCGAACAAACACCATTCATCGTGCAAACGGATAGGTAATTTACCGACGACATTTGAATATATGAAGAGTTCGATAAATCCAAAGAGCTACGTCGAAGTAAGAAGGCGACGCAACGTCCCGTGGATAAGGCATTACGACGCTGTTTCGTGTATGTGCTTGGACGAAGAGCAAGGCCTTTTATACTCGGGCTCTTGGGATAAAACTTACAAAGTGTGGAGATTATCAGATTCGAAATGCCTGGAATCTGTAACTGCACACGATGATGCGGTAAATTCAATTGTTGTGAGTTCAGGATTCTTATTCACCGGATCCGCAGACGGTAGAGTGAAGGTATGGAGAAGGGAATTAGTTGGCAAAACGACTACGCATGTTCTCGTGCAGACAATGTTGAAGCTGGAGTGTGCGGTGACGTCGCTGGCGGTGAATTCCGCGGCTGGGGTGGTGTACAGTGGTTCATCGGACGGATTGGTGAATTATTGTGAAAGGGAGAAGCACTTTCTGACGCATAGTGGGGTTTTGCGTGGCCACAAGTTGGCGGTTTTGTGCCTGGCCGCGGCCGGTAACTTGGTTATGAGTGGTTCCGCGGACAAGAGCATTTGCGTTTGGAGGAGGGAAACCGGTGGGGACCACACGTGCTTGTCCGTGCTGACTGGGCATAGTGGGCCCGTTAAGTGCTTGGCCGTTGAGGAGGATCGTCAAGATGATGATACGGAGGATTATAATCAACGGTGGATATTGTATAGTGGGAGCTTGGACAAGTCGGTCAAGATTTGGAGGGTGTCGAACGACGCCCCTGAATTGAAGCAGCTAGAAGCAATGTGA

Network for GWHGAAZE018499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	42	68	0.017
PF00400.33	WD40	69	105	0.061
PF00400.33	WD40	152	180	0.13
PF00400.33	WD40	186	220	0.0012
PF00400.33	WD40	278	310	0.0043
PF00400.33	WD40	319	366	1.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.443
	SRR3591706	second leaf	6.873
	SRR3591707	mature leaf	16.253
	SRR3591708	Shoot apex	5.183
	SRR3591709	Stem	7.755
	SRR3591710	White floral bud	7.732
	SRR3591711	White flower	11.815
	SRR3591712	Green floral bud	6.858
	SRR3591713	Yellow flower	25.736
SRP173429	SRR8316895	Juvenile bud stage	10.122
	SRR8316896	Juvenile bud stage	2.450
	SRR8316897	Juvenile bud stage	3.045
	SRR8316894	Third green stage	2.983
	SRR8316900	Third green stage	5.151
	SRR8316901	Third green stage	5.066
	SRR8316898	Complete white stage	5.655
	SRR8316899	Complete white stage	10.529
	SRR8316903	Complete white stage	5.602
	SRR8316902	Silver flowering stage	10.637
	SRR8316904	Silver flowering stage	8.230
	SRR8316905	Silver flowering stage	6.951
	SRR8316906	Gold flowering stage	41.599
	SRR8316907	Gold flowering stage	24.576
	SRR8316908	Gold flowering stage	21.895
SRP132670	SRR6706286	Control	7.276
	SRR6706287	Light intensity 50%	8.166
	SRR6706288	Light intensity 20%	8.280
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.796
	CNS0095593	Slightly white alabastrum(diploid) 2	11.440
	CNS0095594	Slightly white alabastrum(diploid) 3	12.864
	CNS0095595	Whole white alabastrum(diploid) 2	10.444
	CNS0095596	Whole white alabastrum(diploid) 3	4.774
	CNS0095597	Whole white alabastrum(diploid) 4	11.926
	CNS0095598	Silvery flower (diploied) 1	22.374
	CNS0095599	Silvery flower (diploied) 2	44.904
	CNS0095600	Silvery flower (diploied) 3	21.930
	CNS0095601	Golden flower (diploid) 1	48.032
	CNS0095602	Golden flower (diploid) 2	36.457
	CNS0095603	Golden flower (diploid) 3	34.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.143
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.020
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.065
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.704
	CNS0095610	Silvery flower (tetraploid) 1	4.831
	CNS0095611	Silvery flower (tetraploid) 2	2.552
	CNS0095612	Silvery flower (tetraploid) 3	7.222
	CNS0095613	Golden flower (tetraploid) 1	7.132
	CNS0095614	Golden flower (tetraploid) 2	8.064
	CNS0095615	Golden flower (tetraploid) 3	3.137
CRA001975	CRR073297	Stem 1	7.904
	CRR073298	Stem 2	9.014
	CRR073299	Stem 3	11.516
	CRR073300	Leaf 1	18.253
	CRR073301	Leaf 2	21.514
	CRR073302	Leaf 3	10.524
	CRR073303	Juvenile bud 1	25.370
	CRR073304	Juvenile bud 2	28.739
	CRR073305	Juvenile bud 3	22.673
	CRR073306	Third green 1	152.938
	CRR073307	Third green 2	92.103
	CRR073308	Third green 3	78.959
	CRR073309	Second white 1	58.911
	CRR073310	Second white 2	74.427
	CRR073311	Second white 3	35.072
	CRR073312	Silver flowering 1	67.920
	CRR073313	Silver flowering 2	92.988
	CRR073314	Silver flowering 3	126.102
	CRR073315	Gold flowering 1	5.247
	CRR073316	Gold flowering 2	5.010
	CRR073317	Gold flowering 3	3.334
	CRR073318	Tawny withering 1	5.159
	CRR073319	Tawny withering 2	10.731
	CRR073320	Tawny withering 3	4.857