Detail information of GWHGAAZE018515


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265193.10PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Vitis vinifera]
Swissprottr|Q8GUP1|CTF77_ARATH0Cleavage stimulation factor subunit 77 {ECO:0000303|PubMed:12379796}
trEMBLtr|A0A068TLP3|A0A068TLP3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97136.1}
TAIR10AT1G17760.10Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2056654920585202-
GWHAAZE00000005mRNA2056654920585202-
GWHAAZE00000005exon2056654920566715-
GWHAAZE00000005exon2056748120567687-
GWHAAZE00000005exon2056794420568099-
GWHAAZE00000005exon2056938320569484-
GWHAAZE00000005exon2056956520569631-
GWHAAZE00000005exon2057113120571283-
GWHAAZE00000005exon2057353920573598-
GWHAAZE00000005exon2057404920574137-
GWHAAZE00000005exon2057422920574260-
GWHAAZE00000005exon2057466520574729-
GWHAAZE00000005exon2057551420575654-
GWHAAZE00000005exon2057820420578272-
GWHAAZE00000005exon2057835620578414-
GWHAAZE00000005exon2057861520578735-
GWHAAZE00000005exon2057922220579285-
GWHAAZE00000005exon2058016520580211-
GWHAAZE00000005exon2058096320581136-
GWHAAZE00000005exon2058151020581650-
GWHAAZE00000005exon2058176120581822-
GWHAAZE00000005exon2058285820582958-
GWHAAZE00000005exon2058322520583334-
GWHAAZE00000005exon2058402620584088-
GWHAAZE00000005exon2058417920584256-
GWHAAZE00000005exon2058501720585202-
GWHAAZE00000005five_prime_UTR2058501720585202-
GWHAAZE00000005five_prime_UTR2058423320584256-
GWHAAZE00000005CDS2058417920584232-
GWHAAZE00000005CDS2058402620584088-
GWHAAZE00000005CDS2058322520583334-
GWHAAZE00000005CDS2058285820582958-
GWHAAZE00000005CDS2058176120581822-
GWHAAZE00000005CDS2058151020581650-
GWHAAZE00000005CDS2058096320581136-
GWHAAZE00000005CDS2058016520580211-
GWHAAZE00000005CDS2057922220579285-
GWHAAZE00000005CDS2057861520578735-
GWHAAZE00000005CDS2057835620578414-
GWHAAZE00000005CDS2057820420578272-
GWHAAZE00000005CDS2057551420575654-
GWHAAZE00000005CDS2057466520574729-
GWHAAZE00000005CDS2057422920574260-
GWHAAZE00000005CDS2057404920574137-
GWHAAZE00000005CDS2057353920573598-
GWHAAZE00000005CDS2057113120571283-
GWHAAZE00000005CDS2056956520569631-
GWHAAZE00000005CDS2056938320569484-
GWHAAZE00000005CDS2056794420568099-
GWHAAZE00000005CDS2056748120567687-
GWHAAZE00000005CDS2056654920566715-
Transcript Sequence

Network for GWHGAAZE018515

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05843.15Suf3516621.80E-67
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14408CSTF3, RNA14 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0006397biological_processmRNA processing
GO:0006396biological_processRNA processing
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.950
SRR3591706second leaf11.036
SRR3591707mature leaf16.162
SRR3591708Shoot apex15.004
SRR3591709Stem22.257
SRR3591710White floral bud22.356
SRR3591711White flower25.939
SRR3591712Green floral bud16.377
SRR3591713Yellow flower22.048
SRP173429 SRR8316895Juvenile bud stage 11.709
SRR8316896Juvenile bud stage 14.973
SRR8316897Juvenile bud stage 6.488
SRR8316894Third green stage 6.157
SRR8316900Third green stage 15.966
SRR8316901Third green stage 14.743
SRR8316898Complete white stage 8.030
SRR8316899Complete white stage 25.221
SRR8316903Complete white stage 15.717
SRR8316902Silver flowering stage10.021
SRR8316904Silver flowering stage16.788
SRR8316905Silver flowering stage7.851
SRR8316906Gold flowering stage 26.471
SRR8316907Gold flowering stage 27.654
SRR8316908Gold flowering stage 24.271
SRP132670SRR6706286Control17.495
SRR6706287Light intensity 50%16.476
SRR6706288Light intensity 20%17.349
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.888
CNS0095593Slightly white alabastrum(diploid) 210.875
CNS0095594Slightly white alabastrum(diploid) 39.266
CNS0095595Whole white alabastrum(diploid) 29.744
CNS0095596Whole white alabastrum(diploid) 37.521
CNS0095597Whole white alabastrum(diploid) 48.463
CNS0095598Silvery flower (diploied) 117.848
CNS0095599Silvery flower (diploied) 210.978
CNS0095600Silvery flower (diploied) 321.929
CNS0095601Golden flower (diploid) 113.669
CNS0095602Golden flower (diploid) 220.083
CNS0095603Golden flower (diploid) 321.242
CNS0095604Slightly white alabastrum(tetraploid) 18.347
CNS0095605Slightly white alabastrum(tetraploid) 28.587
CNS0095606Slightly white alabastrum(tetraploid) 315.962
CNS0095607Whole white alabastrum(tetraploid) 16.011
CNS0095608Whole white alabastrum(tetraploid) 25.161
CNS0095609Whole white alabastrum(tetraploid) 310.466
CNS0095610Silvery flower (tetraploid) 119.840
CNS0095611Silvery flower (tetraploid) 217.298
CNS0095612Silvery flower (tetraploid) 316.913
CNS0095613Golden flower (tetraploid) 111.181
CNS0095614Golden flower (tetraploid) 215.094
CNS0095615Golden flower (tetraploid) 319.400
CRA001975CRR073297Stem 117.528
CRR073298Stem 216.753
CRR073299Stem 314.060
CRR073300Leaf 117.993
CRR073301Leaf 218.014
CRR073302Leaf 313.261
CRR073303Juvenile bud 112.976
CRR073304Juvenile bud 29.167
CRR073305Juvenile bud 316.427
CRR073306Third green 19.108
CRR073307Third green 28.885
CRR073308Third green 39.671
CRR073309Second white 110.054
CRR073310Second white 216.682
CRR073311Second white 314.277
CRR073312Silver flowering 110.750
CRR073313Silver flowering 210.916
CRR073314Silver flowering 38.962
CRR073315Gold flowering 18.932
CRR073316Gold flowering 216.738
CRR073317Gold flowering 310.720
CRR073318Tawny withering 117.233
CRR073319Tawny withering 215.705
CRR073320Tawny withering 313.770