Detail information of GWHGAAZE018543


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006349625.10PREDICTED: ferredoxin--nitrite reductase, chloroplastic-like [Solanum tuberosum]
Swissprottr|P38500|NIR_BETPN0Ferredoxin--nitrite reductase, chloroplastic (Precursor)
trEMBLtr|M1AEW6|M1AEW6_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400021310}
TAIR10AT2G15620.10nitrite reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2095504820958152-
GWHAAZE00000005mRNA2095504820958152-
GWHAAZE00000005exon2095504820955791-
GWHAAZE00000005exon2095595020956238-
GWHAAZE00000005exon2095654320956897-
GWHAAZE00000005exon2095778020958152-
GWHAAZE00000005CDS2095778020958152-
GWHAAZE00000005CDS2095654320956897-
GWHAAZE00000005CDS2095595020956238-
GWHAAZE00000005CDS2095504820955791-
Transcript Sequence

Network for GWHGAAZE018543

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03460.18NIR_SIR_ferr1211874.70E-16
PF01077.23NIR_SIR1973534.50E-36
PF03460.18NIR_SIR_ferr3794421.80E-19
PF01077.23NIR_SIR4575692.90E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00366nirA Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Nitrogen metabolismmap00910

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0020037molecular_functionheme binding
GO:0051536molecular_functioniron-sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.998
SRR3591706second leaf95.802
SRR3591707mature leaf270.501
SRR3591708Shoot apex3.780
SRR3591709Stem11.622
SRR3591710White floral bud25.418
SRR3591711White flower23.128
SRR3591712Green floral bud13.141
SRR3591713Yellow flower6.877
SRP173429 SRR8316895Juvenile bud stage 5.849
SRR8316896Juvenile bud stage 11.213
SRR8316897Juvenile bud stage 2.822
SRR8316894Third green stage 10.643
SRR8316900Third green stage 25.602
SRR8316901Third green stage 42.707
SRR8316898Complete white stage 27.316
SRR8316899Complete white stage 83.238
SRR8316903Complete white stage 61.239
SRR8316902Silver flowering stage34.317
SRR8316904Silver flowering stage28.338
SRR8316905Silver flowering stage13.471
SRR8316906Gold flowering stage 21.087
SRR8316907Gold flowering stage 22.909
SRR8316908Gold flowering stage 28.282
SRP132670SRR6706286Control75.926
SRR6706287Light intensity 50%113.646
SRR6706288Light intensity 20%104.574
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.568
CNS0095593Slightly white alabastrum(diploid) 223.650
CNS0095594Slightly white alabastrum(diploid) 37.274
CNS0095595Whole white alabastrum(diploid) 215.933
CNS0095596Whole white alabastrum(diploid) 37.752
CNS0095597Whole white alabastrum(diploid) 411.677
CNS0095598Silvery flower (diploied) 161.875
CNS0095599Silvery flower (diploied) 260.062
CNS0095600Silvery flower (diploied) 3104.113
CNS0095601Golden flower (diploid) 128.665
CNS0095602Golden flower (diploid) 284.908
CNS0095603Golden flower (diploid) 380.705
CNS0095604Slightly white alabastrum(tetraploid) 19.219
CNS0095605Slightly white alabastrum(tetraploid) 24.719
CNS0095606Slightly white alabastrum(tetraploid) 316.089
CNS0095607Whole white alabastrum(tetraploid) 15.506
CNS0095608Whole white alabastrum(tetraploid) 25.922
CNS0095609Whole white alabastrum(tetraploid) 317.706
CNS0095610Silvery flower (tetraploid) 164.544
CNS0095611Silvery flower (tetraploid) 286.642
CNS0095612Silvery flower (tetraploid) 342.690
CNS0095613Golden flower (tetraploid) 19.626
CNS0095614Golden flower (tetraploid) 288.101
CNS0095615Golden flower (tetraploid) 333.046
CRA001975CRR073297Stem 112.322
CRR073298Stem 213.093
CRR073299Stem 38.641
CRR073300Leaf 120.554
CRR073301Leaf 220.946
CRR073302Leaf 39.624
CRR073303Juvenile bud 111.748
CRR073304Juvenile bud 29.664
CRR073305Juvenile bud 333.285
CRR073306Third green 136.252
CRR073307Third green 217.961
CRR073308Third green 324.059
CRR073309Second white 18.486
CRR073310Second white 210.479
CRR073311Second white 312.702
CRR073312Silver flowering 115.080
CRR073313Silver flowering 27.488
CRR073314Silver flowering 34.658
CRR073315Gold flowering 19.626
CRR073316Gold flowering 210.837
CRR073317Gold flowering 39.220
CRR073318Tawny withering 116.014
CRR073319Tawny withering 214.003
CRR073320Tawny withering 35.956