Gene detail

Detail information of GWHGAAZE018544

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009761851.1	0	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Nicotiana sylvestris]
Swissprot	tr\|Q9LJK1\|FUT11_ARATH	0	Glycoprotein 3-alpha-L-fucosyltransferase A
trEMBL	tr\|D6RSA0\|D6RSA0_TOBAC	0	Fucosyltransferase {ECO:0000313\|EMBL:BAJ08391.1}
TAIR10	AT3G19280.1	5E-164	fucosyltransferase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	20970601	20974053	-
GWHAAZE00000005	mRNA	20970601	20974053	-
GWHAAZE00000005	exon	20970601	20970832	-
GWHAAZE00000005	exon	20971047	20971203	-
GWHAAZE00000005	exon	20971507	20971611	-
GWHAAZE00000005	exon	20971833	20972074	-
GWHAAZE00000005	exon	20972318	20972478	-
GWHAAZE00000005	exon	20973616	20974053	-
GWHAAZE00000005	CDS	20973616	20974053	-
GWHAAZE00000005	CDS	20972318	20972478	-
GWHAAZE00000005	CDS	20971833	20972074	-
GWHAAZE00000005	CDS	20971507	20971611	-
GWHAAZE00000005	CDS	20971047	20971203	-
GWHAAZE00000005	CDS	20970601	20970832	-

Transcript Sequence
>GWHTAAZE018566 ATGGCGGCTAAACTACCAAATCACAGATTGTCATCATCAAGACCACCCAATTCAGATTCACTCGATTCTCACGAATCTTCATCCGCTAATACTACAAAGAAGAGATGCTCCAATTTAATGCCCCTAATGGTAGCCTTAGTTGTTATTGCCGAGATCGGATTTCTCGCTCGCCTTGATATTACCAACAACTCAACCCTAGTCAACTATTGGGACTCCTTCTATCAGTTCACTTCTTTGTCCTGGTCCTCCACGTCACCGTCTTTGCCCGCCATCGCTGCTGCTACTACTGATGAGGAGGTCCGATTGGATGTGTTTGATGGTGGTGATCGGAACTCCGACGACGCCCAGGGTTGTGAGAAGTGGCTAGAGAGACAAGACTATGTGGAGTATCCTAGGGATTTTCACAAGCAACCTATCTATGTTACTGGTGGTGACCAGGAGTTTAAATCTTGTGCTGTGGGGTGTAAGTTTGGATTTGACTCCGCTAAGAAGGCTGATGCTGCATTTGGGTTACCCGAACATACTGGAACGGCTAGCATCCTCCGATCAATGGAATCAGCTGAATACTACTCTGAGAACAACATTGATATGGCACGACGGAGGGGCTATGAAGTTATTATGACAACTAGTCTCTCATCAGATGTTCCTGTTGGGTATTTTTCTTGGGCCGAGTATGATATAATGGCTCCTTTGCAACCGAAAACTGAGACTGCTCTGGCAGCTGCTTTTATTTCTAATTGCGCTGCTCGTAACTTTCGCCTGCAAGCTCTTGAAGCGCTTGAGAAGTCAAACATTAAGATTGATTCTTATGGCGGTTGTCATAGAAATCGTGATGGAAGAGTGGAGAAGGTAGATACTCTGAAGCGCTACAAGTTTAGCTTGGCTTTTGAGAATTCCAATGAAGAAGACTATGTCACCGAAAAGTTCTTCCAATCTCTTGTTGCTGGATCTGTACCTGTGGTTATTGGTGCTCCAAATATCCAAGAATTTGCTCCTTCCCCTGGCTCAGTTTTACATATTAAGGAACTAAAAGATGCGGATTCAATTGCCAGAACCATGAAGTACCTTGCCAAAAATCCTGATGCATACAATCAAACGCTGAAGTGGAAGTTTGAGGGCCCTTCTGATTCTTTCAAAGCACTTGTAGATATGGCAGCGGTTCACTCTTCATGCCGTCTGTGCATACATCTGGCAACAAAGATCCGTGAGAAAGAAGACAAGAACCCAAGATTTGCAAAACGCCCCTGCAAGTGTACCAGAGGCTCAGAAACCGTGTATCACGTGTACATACGAGAACGAGGGAGGTTTGAGATGGAGTCCATTTTCTTGAGGTAA

Network for GWHGAAZE018544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00852.20	Glyco_transf_10	238	402	6.40E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00753	E2.4.1.214	Metabolic pathways	map01100
K00753	E2.4.1.214	Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0016020	cellular_component	membrane
GO:0008417	molecular_function	fucosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.541
	SRR3591706	second leaf	10.666
	SRR3591707	mature leaf	11.308
	SRR3591708	Shoot apex	13.183
	SRR3591709	Stem	17.995
	SRR3591710	White floral bud	19.148
	SRR3591711	White flower	20.340
	SRR3591712	Green floral bud	20.143
	SRR3591713	Yellow flower	11.059
SRP173429	SRR8316895	Juvenile bud stage	9.147
	SRR8316896	Juvenile bud stage	12.274
	SRR8316897	Juvenile bud stage	4.725
	SRR8316894	Third green stage	7.222
	SRR8316900	Third green stage	15.832
	SRR8316901	Third green stage	13.968
	SRR8316898	Complete white stage	4.095
	SRR8316899	Complete white stage	20.564
	SRR8316903	Complete white stage	10.875
	SRR8316902	Silver flowering stage	5.622
	SRR8316904	Silver flowering stage	7.068
	SRR8316905	Silver flowering stage	4.404
	SRR8316906	Gold flowering stage	10.928
	SRR8316907	Gold flowering stage	11.438
	SRR8316908	Gold flowering stage	16.318
SRP132670	SRR6706286	Control	22.474
	SRR6706287	Light intensity 50%	22.047
	SRR6706288	Light intensity 20%	21.874
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.044
	CNS0095593	Slightly white alabastrum(diploid) 2	7.236
	CNS0095594	Slightly white alabastrum(diploid) 3	7.925
	CNS0095595	Whole white alabastrum(diploid) 2	7.631
	CNS0095596	Whole white alabastrum(diploid) 3	4.919
	CNS0095597	Whole white alabastrum(diploid) 4	5.750
	CNS0095598	Silvery flower (diploied) 1	10.785
	CNS0095599	Silvery flower (diploied) 2	8.247
	CNS0095600	Silvery flower (diploied) 3	10.622
	CNS0095601	Golden flower (diploid) 1	7.619
	CNS0095602	Golden flower (diploid) 2	14.608
	CNS0095603	Golden flower (diploid) 3	14.364
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.595
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.299
	CNS0095610	Silvery flower (tetraploid) 1	10.710
	CNS0095611	Silvery flower (tetraploid) 2	9.158
	CNS0095612	Silvery flower (tetraploid) 3	7.867
	CNS0095613	Golden flower (tetraploid) 1	5.439
	CNS0095614	Golden flower (tetraploid) 2	10.674
	CNS0095615	Golden flower (tetraploid) 3	7.095
CRA001975	CRR073297	Stem 1	20.327
	CRR073298	Stem 2	19.399
	CRR073299	Stem 3	16.233
	CRR073300	Leaf 1	20.625
	CRR073301	Leaf 2	17.743
	CRR073302	Leaf 3	15.736
	CRR073303	Juvenile bud 1	13.864
	CRR073304	Juvenile bud 2	10.622
	CRR073305	Juvenile bud 3	19.823
	CRR073306	Third green 1	4.479
	CRR073307	Third green 2	3.698
	CRR073308	Third green 3	5.598
	CRR073309	Second white 1	5.017
	CRR073310	Second white 2	4.891
	CRR073311	Second white 3	5.941
	CRR073312	Silver flowering 1	4.504
	CRR073313	Silver flowering 2	5.945
	CRR073314	Silver flowering 3	5.077
	CRR073315	Gold flowering 1	12.677
	CRR073316	Gold flowering 2	16.805
	CRR073317	Gold flowering 3	12.037
	CRR073318	Tawny withering 1	15.233
	CRR073319	Tawny withering 2	13.014
	CRR073320	Tawny withering 3	12.369