Detail information of GWHGAAZE018548


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011000615.10PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial isoform X1 [Populus euphratica]
Swissprottr|Q9LDD8|MCCB_ARATH0Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial (Precursor)
trEMBLtr|A0A067L1J1|A0A067L1J1_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP42267.1}
TAIR10AT4G34030.103-methylcrotonyl-CoA carboxylase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2100726521012675+
GWHAAZE00000005mRNA2100726521012675+
GWHAAZE00000005exon2100726521007483+
GWHAAZE00000005exon2100757821007697+
GWHAAZE00000005exon2100894421009378+
GWHAAZE00000005exon2100953621009626+
GWHAAZE00000005exon2101022621010467+
GWHAAZE00000005exon2101058221010746+
GWHAAZE00000005exon2101127221011346+
GWHAAZE00000005exon2101164221011773+
GWHAAZE00000005exon2101233121012387+
GWHAAZE00000005exon2101247221012675+
GWHAAZE00000005CDS2100726521007483+
GWHAAZE00000005CDS2100757821007697+
GWHAAZE00000005CDS2100894421009378+
GWHAAZE00000005CDS2100953621009626+
GWHAAZE00000005CDS2101022621010467+
GWHAAZE00000005CDS2101058221010746+
GWHAAZE00000005CDS2101127221011346+
GWHAAZE00000005CDS2101164221011773+
GWHAAZE00000005CDS2101233121012387+
GWHAAZE00000005CDS2101247221012675+
Transcript Sequence

Network for GWHGAAZE018548

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01039.23Carboxyl_trans865691.40E-158
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01969E6.4.1.4B Metabolic pathways map01100
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName
GO:0016874molecular_functionligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.991
SRR3591706second leaf14.303
SRR3591707mature leaf14.176
SRR3591708Shoot apex21.497
SRR3591709Stem21.735
SRR3591710White floral bud22.265
SRR3591711White flower21.351
SRR3591712Green floral bud21.126
SRR3591713Yellow flower21.562
SRP173429 SRR8316895Juvenile bud stage 12.905
SRR8316896Juvenile bud stage 21.505
SRR8316897Juvenile bud stage 10.486
SRR8316894Third green stage 9.468
SRR8316900Third green stage 23.423
SRR8316901Third green stage 25.664
SRR8316898Complete white stage 10.120
SRR8316899Complete white stage 25.938
SRR8316903Complete white stage 17.315
SRR8316902Silver flowering stage9.616
SRR8316904Silver flowering stage14.566
SRR8316905Silver flowering stage6.909
SRR8316906Gold flowering stage 24.713
SRR8316907Gold flowering stage 22.173
SRR8316908Gold flowering stage 27.968
SRP132670SRR6706286Control23.207
SRR6706287Light intensity 50%23.557
SRR6706288Light intensity 20%23.200
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.545
CNS0095593Slightly white alabastrum(diploid) 220.621
CNS0095594Slightly white alabastrum(diploid) 319.072
CNS0095595Whole white alabastrum(diploid) 217.963
CNS0095596Whole white alabastrum(diploid) 317.696
CNS0095597Whole white alabastrum(diploid) 414.079
CNS0095598Silvery flower (diploied) 120.496
CNS0095599Silvery flower (diploied) 217.387
CNS0095600Silvery flower (diploied) 325.514
CNS0095601Golden flower (diploid) 119.380
CNS0095602Golden flower (diploid) 222.708
CNS0095603Golden flower (diploid) 320.870
CNS0095604Slightly white alabastrum(tetraploid) 117.519
CNS0095605Slightly white alabastrum(tetraploid) 215.816
CNS0095606Slightly white alabastrum(tetraploid) 323.859
CNS0095607Whole white alabastrum(tetraploid) 115.216
CNS0095608Whole white alabastrum(tetraploid) 214.113
CNS0095609Whole white alabastrum(tetraploid) 322.808
CNS0095610Silvery flower (tetraploid) 125.805
CNS0095611Silvery flower (tetraploid) 223.185
CNS0095612Silvery flower (tetraploid) 323.642
CNS0095613Golden flower (tetraploid) 115.739
CNS0095614Golden flower (tetraploid) 220.684
CNS0095615Golden flower (tetraploid) 319.754
CRA001975CRR073297Stem 125.540
CRR073298Stem 223.107
CRR073299Stem 323.128
CRR073300Leaf 124.335
CRR073301Leaf 224.894
CRR073302Leaf 320.107
CRR073303Juvenile bud 119.827
CRR073304Juvenile bud 220.736
CRR073305Juvenile bud 328.722
CRR073306Third green 112.524
CRR073307Third green 212.938
CRR073308Third green 314.227
CRR073309Second white 124.873
CRR073310Second white 218.285
CRR073311Second white 315.651
CRR073312Silver flowering 115.610
CRR073313Silver flowering 219.006
CRR073314Silver flowering 314.688
CRR073315Gold flowering 114.224
CRR073316Gold flowering 220.778
CRR073317Gold flowering 314.310
CRR073318Tawny withering 117.829
CRR073319Tawny withering 217.859
CRR073320Tawny withering 314.351