Detail information of GWHGAAZE018552


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009784763.10PREDICTED: lysine-specific demethylase JMJ25-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9SSE9|JMJ25_ARATH1E-140Lysine-specific demethylase JMJ25
trEMBLtr|K4BAB0|K4BAB0_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g082400.2.1}
TAIR10AT1G11950.12E-120Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2103894021044374-
GWHAAZE00000005mRNA2103894021044374-
GWHAAZE00000005exon2104433321044374-
GWHAAZE00000005exon2104408221044234-
GWHAAZE00000005exon2104384521043986-
GWHAAZE00000005exon2104352321043586-
GWHAAZE00000005exon2104319621043291-
GWHAAZE00000005exon2104278721043060-
GWHAAZE00000005exon2104228621042615-
GWHAAZE00000005exon2104171021041932-
GWHAAZE00000005exon2104108921041174-
GWHAAZE00000005exon2104052221040641-
GWHAAZE00000005exon2103986421039925-
GWHAAZE00000005exon2103894021039364-
GWHAAZE00000005CDS2104433321044374-
GWHAAZE00000005CDS2104408221044234-
GWHAAZE00000005CDS2104384521043986-
GWHAAZE00000005CDS2104352321043586-
GWHAAZE00000005CDS2104319621043291-
GWHAAZE00000005CDS2104278721043060-
GWHAAZE00000005CDS2104228621042615-
GWHAAZE00000005CDS2104171021041932-
GWHAAZE00000005CDS2104108921041174-
GWHAAZE00000005CDS2104052221040641-
GWHAAZE00000005CDS2103986421039925-
GWHAAZE00000005CDS2103924721039364-
GWHAAZE00000005three_prime_UTR2103894021039246-
Transcript Sequence

Network for GWHGAAZE018552

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02373.23JmjC4414794.00E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
K15601KDM3 Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.610
SRR3591706second leaf0.407
SRR3591707mature leaf0.297
SRR3591708Shoot apex5.059
SRR3591709Stem0.811
SRR3591710White floral bud0.641
SRR3591711White flower1.230
SRR3591712Green floral bud0.992
SRR3591713Yellow flower2.674
SRP173429 SRR8316895Juvenile bud stage 0.918
SRR8316896Juvenile bud stage 0.834
SRR8316897Juvenile bud stage 0.183
SRR8316894Third green stage 0.224
SRR8316900Third green stage 0.412
SRR8316901Third green stage 0.295
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.531
SRR8316903Complete white stage 0.214
SRR8316902Silver flowering stage0.042
SRR8316904Silver flowering stage0.133
SRR8316905Silver flowering stage0.009
SRR8316906Gold flowering stage 0.072
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.253
SRP132670SRR6706286Control0.313
SRR6706287Light intensity 50%0.461
SRR6706288Light intensity 20%0.417
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.236
CNS0095593Slightly white alabastrum(diploid) 20.222
CNS0095594Slightly white alabastrum(diploid) 30.630
CNS0095595Whole white alabastrum(diploid) 20.186
CNS0095596Whole white alabastrum(diploid) 30.098
CNS0095597Whole white alabastrum(diploid) 40.018
CNS0095598Silvery flower (diploied) 10.194
CNS0095599Silvery flower (diploied) 20.633
CNS0095600Silvery flower (diploied) 30.260
CNS0095601Golden flower (diploid) 10.217
CNS0095602Golden flower (diploid) 20.205
CNS0095603Golden flower (diploid) 30.207
CNS0095604Slightly white alabastrum(tetraploid) 10.572
CNS0095605Slightly white alabastrum(tetraploid) 20.275
CNS0095606Slightly white alabastrum(tetraploid) 30.895
CNS0095607Whole white alabastrum(tetraploid) 10.156
CNS0095608Whole white alabastrum(tetraploid) 20.148
CNS0095609Whole white alabastrum(tetraploid) 30.264
CNS0095610Silvery flower (tetraploid) 10.173
CNS0095611Silvery flower (tetraploid) 20.256
CNS0095612Silvery flower (tetraploid) 30.255
CNS0095613Golden flower (tetraploid) 10.121
CNS0095614Golden flower (tetraploid) 20.090
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.100
CRR073298Stem 21.492
CRR073299Stem 31.102
CRR073300Leaf 10.193
CRR073301Leaf 20.640
CRR073302Leaf 30.088
CRR073303Juvenile bud 10.713
CRR073304Juvenile bud 20.023
CRR073305Juvenile bud 30.516
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.001
CRR073309Second white 10.002
CRR073310Second white 20.000
CRR073311Second white 30.288
CRR073312Silver flowering 10.087
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.273
CRR073316Gold flowering 20.519
CRR073317Gold flowering 30.105
CRR073318Tawny withering 11.482
CRR073319Tawny withering 20.979
CRR073320Tawny withering 30.496