Detail information of GWHGAAZE018559


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010270536.10PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Nelumbo nucifera]
Swissprottr|Q9FXA2|PABP8_ARATH0Polyadenylate-binding protein 8
trEMBLtr|W9RY32|W9RY32_9ROSA0Polyadenylate-binding protein 2 {ECO:0000313|EMBL:EXC17307.1}
TAIR10AT1G49760.20poly(A) binding protein 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2113621221152028-
GWHAAZE00000005mRNA2113621221152028-
GWHAAZE00000005exon2115179721152028-
GWHAAZE00000005exon2114911721149235-
GWHAAZE00000005exon2114887821148999-
GWHAAZE00000005exon2114834321148706-
GWHAAZE00000005exon2114817121148248-
GWHAAZE00000005exon2114798821148077-
GWHAAZE00000005exon2114756121147698-
GWHAAZE00000005exon2114566021145839-
GWHAAZE00000005exon2114535121145557-
GWHAAZE00000005exon2114461621144783-
GWHAAZE00000005exon2113925721139346-
GWHAAZE00000005exon2113891321139054-
GWHAAZE00000005exon2113745621138802-
GWHAAZE00000005exon2113718221137308-
GWHAAZE00000005exon2113701221137072-
GWHAAZE00000005exon2113657821136682-
GWHAAZE00000005exon2113621221136511-
GWHAAZE00000005CDS2115179721152028-
GWHAAZE00000005CDS2114911721149235-
GWHAAZE00000005CDS2114887821148999-
GWHAAZE00000005CDS2114834321148706-
GWHAAZE00000005CDS2114817121148248-
GWHAAZE00000005CDS2114798821148077-
GWHAAZE00000005CDS2114756121147698-
GWHAAZE00000005CDS2114566021145839-
GWHAAZE00000005CDS2114535121145557-
GWHAAZE00000005CDS2114461621144783-
GWHAAZE00000005CDS2113925721139346-
GWHAAZE00000005CDS2113891321139054-
GWHAAZE00000005CDS2113745621138802-
GWHAAZE00000005CDS2113718221137308-
GWHAAZE00000005CDS2113701221137072-
GWHAAZE00000005CDS2113657821136682-
GWHAAZE00000005CDS2113621221136511-
Transcript Sequence

Network for GWHGAAZE018559

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_126961.00E-18
PF00076.23RRM_11141577.70E-10
PF00076.23RRM_11582168.90E-19
PF00076.23RRM_12513194.00E-20
PF00658.19PABP4995641.70E-26
PF05911.12FPP6279502.50E-120
PF05911.12FPP94910542.20E-19
PF05911.12FPP108911895.20E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13126PABPC RNA transport map03013
mRNA surveillance pathwaymap03015
RNA degradationmap03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf181.817
SRR3591706second leaf140.075
SRR3591707mature leaf105.829
SRR3591708Shoot apex278.990
SRR3591709Stem125.465
SRR3591710White floral bud73.509
SRR3591711White flower74.692
SRR3591712Green floral bud112.965
SRR3591713Yellow flower49.442
SRP173429 SRR8316895Juvenile bud stage 93.197
SRR8316896Juvenile bud stage 117.322
SRR8316897Juvenile bud stage 54.792
SRR8316894Third green stage 43.277
SRR8316900Third green stage 91.453
SRR8316901Third green stage 91.187
SRR8316898Complete white stage 16.482
SRR8316899Complete white stage 80.270
SRR8316903Complete white stage 26.337
SRR8316902Silver flowering stage15.311
SRR8316904Silver flowering stage19.158
SRR8316905Silver flowering stage8.278
SRR8316906Gold flowering stage 36.261
SRR8316907Gold flowering stage 36.408
SRR8316908Gold flowering stage 38.622
SRP132670SRR6706286Control60.748
SRR6706287Light intensity 50%64.288
SRR6706288Light intensity 20%67.265
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1151.442
CNS0095593Slightly white alabastrum(diploid) 2158.174
CNS0095594Slightly white alabastrum(diploid) 3177.588
CNS0095595Whole white alabastrum(diploid) 2125.788
CNS0095596Whole white alabastrum(diploid) 3136.864
CNS0095597Whole white alabastrum(diploid) 4110.034
CNS0095598Silvery flower (diploied) 1121.942
CNS0095599Silvery flower (diploied) 2106.653
CNS0095600Silvery flower (diploied) 372.723
CNS0095601Golden flower (diploid) 1113.813
CNS0095602Golden flower (diploid) 296.382
CNS0095603Golden flower (diploid) 390.809
CNS0095604Slightly white alabastrum(tetraploid) 1184.464
CNS0095605Slightly white alabastrum(tetraploid) 2188.114
CNS0095606Slightly white alabastrum(tetraploid) 3215.871
CNS0095607Whole white alabastrum(tetraploid) 1113.880
CNS0095608Whole white alabastrum(tetraploid) 273.848
CNS0095609Whole white alabastrum(tetraploid) 3125.664
CNS0095610Silvery flower (tetraploid) 161.269
CNS0095611Silvery flower (tetraploid) 273.076
CNS0095612Silvery flower (tetraploid) 348.404
CNS0095613Golden flower (tetraploid) 133.106
CNS0095614Golden flower (tetraploid) 259.129
CNS0095615Golden flower (tetraploid) 327.305
CRA001975CRR073297Stem 1189.571
CRR073298Stem 2172.163
CRR073299Stem 3168.860
CRR073300Leaf 1145.320
CRR073301Leaf 2147.822
CRR073302Leaf 3131.689
CRR073303Juvenile bud 1113.557
CRR073304Juvenile bud 268.485
CRR073305Juvenile bud 3101.724
CRR073306Third green 121.525
CRR073307Third green 225.374
CRR073308Third green 325.540
CRR073309Second white 121.449
CRR073310Second white 225.132
CRR073311Second white 315.961
CRR073312Silver flowering 119.235
CRR073313Silver flowering 218.870
CRR073314Silver flowering 319.913
CRR073315Gold flowering 1133.637
CRR073316Gold flowering 2149.574
CRR073317Gold flowering 387.131
CRR073318Tawny withering 1199.877
CRR073319Tawny withering 2201.768
CRR073320Tawny withering 3211.994