Detail information of GWHGAAZE018584


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010647966.10PREDICTED: DNA repair protein REV1 isoform X2 [Vitis vinifera]
Swissprottr|Q8RXL1|REV1_ARATH0DNA repair protein REV1
trEMBLtr|F6H6A4|F6H6A4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47733.1}
TAIR10AT5G44750.10DNA-directed DNA polymerases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2149805921511521-
GWHAAZE00000005mRNA2149805921511521-
GWHAAZE00000005exon2149805921498709-
GWHAAZE00000005exon2150073121500804-
GWHAAZE00000005exon2150089021501138-
GWHAAZE00000005exon2150155721501658-
GWHAAZE00000005exon2150194221502010-
GWHAAZE00000005exon2150324421503316-
GWHAAZE00000005exon2150345021503533-
GWHAAZE00000005exon2150370921503795-
GWHAAZE00000005exon2150388521503944-
GWHAAZE00000005exon2150520421505296-
GWHAAZE00000005exon2150556921505688-
GWHAAZE00000005exon2150588321506086-
GWHAAZE00000005exon2150620121506251-
GWHAAZE00000005exon2150642721506515-
GWHAAZE00000005exon2150659021506722-
GWHAAZE00000005exon2150688721507030-
GWHAAZE00000005exon2150950121510018-
GWHAAZE00000005exon2151051621510592-
GWHAAZE00000005exon2151069921510814-
GWHAAZE00000005exon2151089121511035-
GWHAAZE00000005exon2151127321511521-
GWHAAZE00000005five_prime_UTR2151147321511521-
GWHAAZE00000005CDS2151127321511472-
GWHAAZE00000005CDS2151089121511035-
GWHAAZE00000005CDS2151069921510814-
GWHAAZE00000005CDS2151051621510592-
GWHAAZE00000005CDS2150950121510018-
GWHAAZE00000005CDS2150688721507030-
GWHAAZE00000005CDS2150659021506722-
GWHAAZE00000005CDS2150642721506515-
GWHAAZE00000005CDS2150620121506251-
GWHAAZE00000005CDS2150588321506086-
GWHAAZE00000005CDS2150556921505688-
GWHAAZE00000005CDS2150520421505296-
GWHAAZE00000005CDS2150388521503944-
GWHAAZE00000005CDS2150370921503795-
GWHAAZE00000005CDS2150345021503533-
GWHAAZE00000005CDS2150324421503316-
GWHAAZE00000005CDS2150194221502010-
GWHAAZE00000005CDS2150155721501658-
GWHAAZE00000005CDS2150089021501138-
GWHAAZE00000005CDS2150073121500804-
GWHAAZE00000005CDS2149805921498709-
Transcript Sequence

Network for GWHGAAZE018584

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16589.6BRCT_2961837.50E-08
PF00817.21IMS3985441.10E-41
PF11798.9IMS_HHH5575861.80E-05
PF11799.9IMS_C6317516.40E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03515REV1 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0042276biological_processerror-prone translesion synthesis
GO:0003684molecular_functiondamaged DNA binding
GO:0016779molecular_functionnucleotidyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.001
SRR3591706second leaf5.685
SRR3591707mature leaf14.555
SRR3591708Shoot apex6.208
SRR3591709Stem11.545
SRR3591710White floral bud10.753
SRR3591711White flower19.159
SRR3591712Green floral bud5.645
SRR3591713Yellow flower24.182
SRP173429 SRR8316895Juvenile bud stage 4.037
SRR8316896Juvenile bud stage 5.918
SRR8316897Juvenile bud stage 2.781
SRR8316894Third green stage 3.721
SRR8316900Third green stage 10.072
SRR8316901Third green stage 8.333
SRR8316898Complete white stage 5.055
SRR8316899Complete white stage 7.699
SRR8316903Complete white stage 10.482
SRR8316902Silver flowering stage7.123
SRR8316904Silver flowering stage16.609
SRR8316905Silver flowering stage5.151
SRR8316906Gold flowering stage 18.651
SRR8316907Gold flowering stage 19.235
SRR8316908Gold flowering stage 16.959
SRP132670SRR6706286Control8.540
SRR6706287Light intensity 50%8.349
SRR6706288Light intensity 20%9.452
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.543
CNS0095593Slightly white alabastrum(diploid) 23.754
CNS0095594Slightly white alabastrum(diploid) 32.502
CNS0095595Whole white alabastrum(diploid) 23.672
CNS0095596Whole white alabastrum(diploid) 34.269
CNS0095597Whole white alabastrum(diploid) 43.806
CNS0095598Silvery flower (diploied) 16.684
CNS0095599Silvery flower (diploied) 23.212
CNS0095600Silvery flower (diploied) 315.277
CNS0095601Golden flower (diploid) 15.986
CNS0095602Golden flower (diploid) 217.507
CNS0095603Golden flower (diploid) 316.502
CNS0095604Slightly white alabastrum(tetraploid) 13.596
CNS0095605Slightly white alabastrum(tetraploid) 23.573
CNS0095606Slightly white alabastrum(tetraploid) 39.147
CNS0095607Whole white alabastrum(tetraploid) 13.074
CNS0095608Whole white alabastrum(tetraploid) 22.302
CNS0095609Whole white alabastrum(tetraploid) 36.671
CNS0095610Silvery flower (tetraploid) 119.668
CNS0095611Silvery flower (tetraploid) 217.966
CNS0095612Silvery flower (tetraploid) 313.454
CNS0095613Golden flower (tetraploid) 116.518
CNS0095614Golden flower (tetraploid) 215.351
CNS0095615Golden flower (tetraploid) 340.959
CRA001975CRR073297Stem 16.169
CRR073298Stem 26.337
CRR073299Stem 33.286
CRR073300Leaf 19.728
CRR073301Leaf 28.079
CRR073302Leaf 35.010
CRR073303Juvenile bud 13.745
CRR073304Juvenile bud 22.239
CRR073305Juvenile bud 39.904
CRR073306Third green 12.717
CRR073307Third green 22.665
CRR073308Third green 34.396
CRR073309Second white 12.862
CRR073310Second white 25.157
CRR073311Second white 35.357
CRR073312Silver flowering 14.322
CRR073313Silver flowering 24.079
CRR073314Silver flowering 33.524
CRR073315Gold flowering 10.979
CRR073316Gold flowering 23.401
CRR073317Gold flowering 31.407
CRR073318Tawny withering 11.949
CRR073319Tawny withering 21.945
CRR073320Tawny withering 32.817