Detail information of GWHGAAZE018590


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010647952.13.0807E-162PREDICTED: TIP41-like protein [Vitis vinifera]
trEMBLtr|D7SXV6|D7SXV6_VITVI1E-162Putative uncharacterized protein {ECO:0000313|EMBL:CBI22506.3}
TAIR10AT4G34270.12E-107TIP41-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2156509121569446-
GWHAAZE00000005mRNA2156509121569446-
GWHAAZE00000005exon2156921721569446-
GWHAAZE00000005exon2156770021567885-
GWHAAZE00000005exon2156667121566758-
GWHAAZE00000005exon2156630821566424-
GWHAAZE00000005exon2156611821566198-
GWHAAZE00000005exon2156597621566017-
GWHAAZE00000005exon2156556921565697-
GWHAAZE00000005exon2156509121565201-
GWHAAZE00000005CDS2156921721569446-
GWHAAZE00000005CDS2156770021567885-
GWHAAZE00000005CDS2156667121566758-
GWHAAZE00000005CDS2156630821566424-
GWHAAZE00000005CDS2156611821566198-
GWHAAZE00000005CDS2156597621566017-
GWHAAZE00000005CDS2156556921565697-
GWHAAZE00000005CDS2156509121565201-
Transcript Sequence

Network for GWHGAAZE018590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04176.14TIP41902896.40E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17607TIPRL, TIP41 Autophagy - yeast map04138

Gene Ontology

GO term OntologyName
GO:0043666biological_processregulation of phosphoprotein phosphatase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.062
SRR3591706second leaf31.226
SRR3591707mature leaf20.760
SRR3591708Shoot apex54.507
SRR3591709Stem42.661
SRR3591710White floral bud29.463
SRR3591711White flower40.122
SRR3591712Green floral bud36.145
SRR3591713Yellow flower44.383
SRP173429 SRR8316895Juvenile bud stage 24.732
SRR8316896Juvenile bud stage 33.046
SRR8316897Juvenile bud stage 17.878
SRR8316894Third green stage 15.025
SRR8316900Third green stage 40.448
SRR8316901Third green stage 37.479
SRR8316898Complete white stage 12.741
SRR8316899Complete white stage 54.377
SRR8316903Complete white stage 17.397
SRR8316902Silver flowering stage8.173
SRR8316904Silver flowering stage7.822
SRR8316905Silver flowering stage6.437
SRR8316906Gold flowering stage 18.919
SRR8316907Gold flowering stage 15.976
SRR8316908Gold flowering stage 24.635
SRP132670SRR6706286Control20.552
SRR6706287Light intensity 50%23.717
SRR6706288Light intensity 20%26.369
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.091
CNS0095593Slightly white alabastrum(diploid) 240.463
CNS0095594Slightly white alabastrum(diploid) 330.585
CNS0095595Whole white alabastrum(diploid) 232.612
CNS0095596Whole white alabastrum(diploid) 332.004
CNS0095597Whole white alabastrum(diploid) 432.226
CNS0095598Silvery flower (diploied) 138.205
CNS0095599Silvery flower (diploied) 230.682
CNS0095600Silvery flower (diploied) 328.444
CNS0095601Golden flower (diploid) 131.532
CNS0095602Golden flower (diploid) 234.659
CNS0095603Golden flower (diploid) 337.059
CNS0095604Slightly white alabastrum(tetraploid) 134.132
CNS0095605Slightly white alabastrum(tetraploid) 234.605
CNS0095606Slightly white alabastrum(tetraploid) 342.531
CNS0095607Whole white alabastrum(tetraploid) 123.534
CNS0095608Whole white alabastrum(tetraploid) 221.479
CNS0095609Whole white alabastrum(tetraploid) 330.613
CNS0095610Silvery flower (tetraploid) 135.398
CNS0095611Silvery flower (tetraploid) 247.408
CNS0095612Silvery flower (tetraploid) 329.151
CNS0095613Golden flower (tetraploid) 123.314
CNS0095614Golden flower (tetraploid) 231.103
CNS0095615Golden flower (tetraploid) 313.364
CRA001975CRR073297Stem 124.136
CRR073298Stem 223.490
CRR073299Stem 320.752
CRR073300Leaf 123.780
CRR073301Leaf 223.702
CRR073302Leaf 322.567
CRR073303Juvenile bud 121.220
CRR073304Juvenile bud 218.274
CRR073305Juvenile bud 318.689
CRR073306Third green 13.264
CRR073307Third green 23.126
CRR073308Third green 33.292
CRR073309Second white 14.725
CRR073310Second white 24.389
CRR073311Second white 33.611
CRR073312Silver flowering 15.232
CRR073313Silver flowering 24.209
CRR073314Silver flowering 34.020
CRR073315Gold flowering 114.713
CRR073316Gold flowering 212.494
CRR073317Gold flowering 312.451
CRR073318Tawny withering 120.995
CRR073319Tawny withering 216.545
CRR073320Tawny withering 327.966