Detail information of GWHGAAZE018592


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010647949.11.4401E-164PREDICTED: homeobox protein HAT3.1 isoform X2 [Vitis vinifera]
Swissprottr|P48786|PRH_PETCR6E-136Pathogenesis-related homeodomain protein
trEMBLtr|F6H698|F6H698_VITVI8E-165Putative uncharacterized protein {ECO:0000313|EMBL:CCB47727.1}
TAIR10AT3G19510.14E-64Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2157910521584893-
GWHAAZE00000005mRNA2157910521584893-
GWHAAZE00000005exon2157910521579290-
GWHAAZE00000005exon2158082121581075-
GWHAAZE00000005exon2158254121583020-
GWHAAZE00000005exon2158347221583584-
GWHAAZE00000005exon2158368921583833-
GWHAAZE00000005exon2158394421584097-
GWHAAZE00000005exon2158449921584893-
GWHAAZE00000005CDS2158449921584893-
GWHAAZE00000005CDS2158394421584097-
GWHAAZE00000005CDS2158368921583833-
GWHAAZE00000005CDS2158347221583584-
GWHAAZE00000005CDS2158254121583020-
GWHAAZE00000005CDS2158082121581075-
GWHAAZE00000005CDS2157910521579290-
Transcript Sequence

Network for GWHGAAZE018592

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD1922472.10E-08
PF00046.30Homeodomain5095552.60E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-PHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.120
SRR3591706second leaf9.208
SRR3591707mature leaf7.367
SRR3591708Shoot apex19.464
SRR3591709Stem14.203
SRR3591710White floral bud14.957
SRR3591711White flower15.513
SRR3591712Green floral bud14.378
SRR3591713Yellow flower9.660
SRP173429 SRR8316895Juvenile bud stage 11.255
SRR8316896Juvenile bud stage 16.337
SRR8316897Juvenile bud stage 7.815
SRR8316894Third green stage 7.679
SRR8316900Third green stage 20.474
SRR8316901Third green stage 20.746
SRR8316898Complete white stage 5.463
SRR8316899Complete white stage 25.651
SRR8316903Complete white stage 10.813
SRR8316902Silver flowering stage6.784
SRR8316904Silver flowering stage8.747
SRR8316905Silver flowering stage3.916
SRR8316906Gold flowering stage 12.236
SRR8316907Gold flowering stage 11.380
SRR8316908Gold flowering stage 12.290
SRP132670SRR6706286Control12.826
SRR6706287Light intensity 50%12.698
SRR6706288Light intensity 20%14.376
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.972
CNS0095593Slightly white alabastrum(diploid) 212.995
CNS0095594Slightly white alabastrum(diploid) 39.631
CNS0095595Whole white alabastrum(diploid) 211.261
CNS0095596Whole white alabastrum(diploid) 39.753
CNS0095597Whole white alabastrum(diploid) 49.440
CNS0095598Silvery flower (diploied) 113.990
CNS0095599Silvery flower (diploied) 211.109
CNS0095600Silvery flower (diploied) 316.347
CNS0095601Golden flower (diploid) 111.206
CNS0095602Golden flower (diploid) 214.083
CNS0095603Golden flower (diploid) 314.674
CNS0095604Slightly white alabastrum(tetraploid) 112.065
CNS0095605Slightly white alabastrum(tetraploid) 28.425
CNS0095606Slightly white alabastrum(tetraploid) 318.963
CNS0095607Whole white alabastrum(tetraploid) 110.023
CNS0095608Whole white alabastrum(tetraploid) 27.030
CNS0095609Whole white alabastrum(tetraploid) 318.203
CNS0095610Silvery flower (tetraploid) 114.761
CNS0095611Silvery flower (tetraploid) 214.037
CNS0095612Silvery flower (tetraploid) 312.171
CNS0095613Golden flower (tetraploid) 18.481
CNS0095614Golden flower (tetraploid) 213.702
CNS0095615Golden flower (tetraploid) 39.469
CRA001975CRR073297Stem 122.872
CRR073298Stem 218.295
CRR073299Stem 313.153
CRR073300Leaf 122.221
CRR073301Leaf 218.690
CRR073302Leaf 314.081
CRR073303Juvenile bud 117.209
CRR073304Juvenile bud 211.945
CRR073305Juvenile bud 315.489
CRR073306Third green 12.705
CRR073307Third green 22.152
CRR073308Third green 32.982
CRR073309Second white 12.455
CRR073310Second white 23.880
CRR073311Second white 32.502
CRR073312Silver flowering 12.990
CRR073313Silver flowering 22.451
CRR073314Silver flowering 32.599
CRR073315Gold flowering 113.554
CRR073316Gold flowering 221.700
CRR073317Gold flowering 36.012
CRR073318Tawny withering 114.536
CRR073319Tawny withering 220.816
CRR073320Tawny withering 316.753