Gene detail

Detail information of GWHGAAZE018598

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088178.1	0	PREDICTED: uncharacterized protein LOC105169483 [Sesamum indicum]
Swissprot	tr\|O22467\|MSI1_ARATH	0.00000002	Histone-binding protein MSI1
trEMBL	tr\|F6H680\|F6H680_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47722.1}
TAIR10	AT4G34280.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21644086	21650185	-
GWHAAZE00000005	mRNA	21644086	21650185	-
GWHAAZE00000005	exon	21650154	21650185	-
GWHAAZE00000005	exon	21648568	21648634	-
GWHAAZE00000005	exon	21648142	21648395	-
GWHAAZE00000005	exon	21646567	21647119	-
GWHAAZE00000005	exon	21645276	21645932	-
GWHAAZE00000005	exon	21644704	21645162	-
GWHAAZE00000005	exon	21644086	21644301	-
GWHAAZE00000005	CDS	21650154	21650185	-
GWHAAZE00000005	CDS	21648568	21648634	-
GWHAAZE00000005	CDS	21648142	21648395	-
GWHAAZE00000005	CDS	21646567	21647119	-
GWHAAZE00000005	CDS	21645276	21645932	-
GWHAAZE00000005	CDS	21644704	21645162	-
GWHAAZE00000005	CDS	21644086	21644301	-

Transcript Sequence
>GWHTAAZE018620 ATGTCTTTCAAGGTTCCGGTGGGTATATTCAGGTATTTCGATTCCTGCAGGAGGCAAGGAATTATAGCTAATAAAGCAGTCTTGTTAGCTTTATTCAAGGCCGAGGGCAAGAAAGCCCGCAATGAGGTGTGCAGCCTCGTCCTTTTCTTGGATGACTTAAAGGACGTTGATTTCCATCCACTCCTCGATGTGTTTATGGAAATTGATGCTTCGGAGATTGACGCAGTTGACATACTACAGAAATCATCGTGTTTCTTGAATGGAGAATATGTTTTGTCATTGCTGCGTGCTATCAATCAAAAGCTTCGAGTTGTTGATCTTCAGGACATGTCATTTGGCAAGGATTTCTTGTTGAATCTATCTCAGAGAGGCTTGACATGCCAAGTCTTAAACTTGAGGTCTTCCCATTTCCGCAAGCTCAACTTGGTCGGTGAGTTCATGCAGATACACACACTCAGCCTCGATTTCAGTGCTTCACTCACCACTTTTCGAGAGGATTGTTTTACTTGCATGCCGAATCTAAAGTGCTTGTCATTGTGTGAGACTAGAGTTGCCAATCTGTGGACAACAAGTGCAGCACTCGCTAAACTCTCTTCTTTAGTTCAACTCCGTTTTCAGAATTACAACACTGATTCAGGTCATCTGAATAGTCGCCATCTGCACATTGAAGCACTGCCCTTTGATGGTGAAGAAACCTTAAATCAGTATCTATATGCTGAAGATGAGCTTACTGATTTGTTTCCTCTTGATAATTATGATTCTGGTCATGAAATTCAGAGCATGTTAGAGGATTCATCAGATGACAGTGAAGTGGACTTTTCACGTCGTCATCATGATTTCATTTTGGCAGAACTTTTCTCTGATGTACTTCCTGGGTGGAATGGGATGGTTGGCCTGCAAAGTGAGATTTCTTTTGGCACATGGGGCATGCAAGATGAAGAGTCTTCCTCGCCAAGTTCTTCCAACTCAAGACGTATCTCAAATGTTGCTCCAGAAAAGTATATTTCTTATCATCCTTCACCAATATGCTATGAGAAACATTACAGAGAGTACATGATAGCTTCTTTACCCAGTTTGAGAATTCTTGATAACTTACCTATCAGAAAGATTGATAGGGACAGAGCCAATACTATATATTCGCAACACTTTGAGTATCTACCTTATAGAAGGAGGGACAAAGAGAGTGTTGTTAGTATCTTGCATAAGCGTGAAATTAAAGCGGGACGTACTTGCACGGGGGCGCAAAAGCCATCACATGCATCGGATAAGTCTCAATATTTTTATTCCAGGTCTCTTTGTGCCTCCAAAGTCGGTTCTTCTGCTTGGCCTTTTTTGCGTCCTCTTTCTATTTTGGGAAGTGTACCTAGAGATGAGGGTGACAAATTTCGTCCTCGGCAGTTTGAATACCATCCATCTAATCCGAGCCTTTTGGTTTTCGGAACTTTGGATGGTGAAGTGGTGGTAGTCAACCATGAGAGTGAGAAGATTGTTAGTTACATCCCGTCACGTGGAGCAATGAATAGTGTGCTGGGACTATGCTGGCTAAAAAATTACCCCTCCAAGCTCATTGCTGGTTCTGATAATGGTTCGCTAAAATTGTATGATATCCAATATATGCCTTCAACAACTACTGGTTCTGTTACCTTTGACGAGTTTGACCAATTAACATCAGTTCATGTCAACTCAACAAATGATTTTTTCCTTGCGAGCGGATACTCCTCACACGTCGCTTTATATGACATCAGCAGTGGAAAAAGGTTACAGGTTTTCACTGACATGCATCAACTGCATATTAATGTTGTTAAGTTTGCAAACCACTCGCCATCCCTTTTTGCTACTTCGTCATTTGATAAGGATGTTAAGATGTGGGATTTACGACAAAAACCGATTCGCCCTTGCTATACGGCCTCAAGCTCTCGAGGAAATGTGATGGTTTGCTTTTCTCCGGATGATCACTATCTTCTTGCATCAGCTGTTGACAACGAGGTATATTTTAGAACTCATCTACAATATTTGCTAAACGATCGTTTTCAGGTTAAACAACTACTGGCTGTTGATGGAAGGCTCCACCTGGACTTTGGAATAGCTCCGACTAGAAGTTCTCAAAATTACACGCGTTCTTATTACTTGAATGGAAGGGATTATATTATCAGTGGAAGTTGTGATGAACATGTAGTGCGGATTTGCTGTGCTCAAACAGGAAGGCGACTCAGGGATATATCACTGGAGGTAAATTGA

Network for GWHGAAZE018598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.750
	SRR3591706	second leaf	4.363
	SRR3591707	mature leaf	8.364
	SRR3591708	Shoot apex	6.350
	SRR3591709	Stem	8.322
	SRR3591710	White floral bud	5.955
	SRR3591711	White flower	9.428
	SRR3591712	Green floral bud	6.580
	SRR3591713	Yellow flower	8.298
SRP173429	SRR8316895	Juvenile bud stage	6.760
	SRR8316896	Juvenile bud stage	8.554
	SRR8316897	Juvenile bud stage	4.387
	SRR8316894	Third green stage	4.409
	SRR8316900	Third green stage	7.244
	SRR8316901	Third green stage	7.642
	SRR8316898	Complete white stage	1.207
	SRR8316899	Complete white stage	7.598
	SRR8316903	Complete white stage	4.175
	SRR8316902	Silver flowering stage	4.362
	SRR8316904	Silver flowering stage	5.501
	SRR8316905	Silver flowering stage	2.421
	SRR8316906	Gold flowering stage	11.671
	SRR8316907	Gold flowering stage	8.634
	SRR8316908	Gold flowering stage	9.278
SRP132670	SRR6706286	Control	5.395
	SRR6706287	Light intensity 50%	6.027
	SRR6706288	Light intensity 20%	6.771
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.005
	CNS0095593	Slightly white alabastrum(diploid) 2	3.135
	CNS0095594	Slightly white alabastrum(diploid) 3	4.609
	CNS0095595	Whole white alabastrum(diploid) 2	3.252
	CNS0095596	Whole white alabastrum(diploid) 3	3.967
	CNS0095597	Whole white alabastrum(diploid) 4	3.275
	CNS0095598	Silvery flower (diploied) 1	9.478
	CNS0095599	Silvery flower (diploied) 2	5.517
	CNS0095600	Silvery flower (diploied) 3	11.058
	CNS0095601	Golden flower (diploid) 1	8.149
	CNS0095602	Golden flower (diploid) 2	12.518
	CNS0095603	Golden flower (diploid) 3	13.444
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.058
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.314
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.731
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.351
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.908
	CNS0095610	Silvery flower (tetraploid) 1	10.378
	CNS0095611	Silvery flower (tetraploid) 2	11.179
	CNS0095612	Silvery flower (tetraploid) 3	6.570
	CNS0095613	Golden flower (tetraploid) 1	7.322
	CNS0095614	Golden flower (tetraploid) 2	12.251
	CNS0095615	Golden flower (tetraploid) 3	10.210
CRA001975	CRR073297	Stem 1	9.662
	CRR073298	Stem 2	5.846
	CRR073299	Stem 3	6.586
	CRR073300	Leaf 1	7.236
	CRR073301	Leaf 2	4.319
	CRR073302	Leaf 3	4.088
	CRR073303	Juvenile bud 1	3.926
	CRR073304	Juvenile bud 2	2.299
	CRR073305	Juvenile bud 3	3.616
	CRR073306	Third green 1	1.787
	CRR073307	Third green 2	0.704
	CRR073308	Third green 3	1.209
	CRR073309	Second white 1	3.405
	CRR073310	Second white 2	2.171
	CRR073311	Second white 3	3.390
	CRR073312	Silver flowering 1	2.543
	CRR073313	Silver flowering 2	3.144
	CRR073314	Silver flowering 3	2.430
	CRR073315	Gold flowering 1	2.794
	CRR073316	Gold flowering 2	6.464
	CRR073317	Gold flowering 3	3.675
	CRR073318	Tawny withering 1	3.835
	CRR073319	Tawny withering 2	5.089
	CRR073320	Tawny withering 3	4.198