Detail information of GWHGAAZE018608


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002527484.12.51322E-64conserved hypothetical protein [Ricinus communis]
Swissprottr|Q8RXD3|AIP2_ARATH9E-12E3 ubiquitin-protein ligase AIP2
trEMBLtr|B9SNB5|B9SNB5_RICCO9E-65Putative uncharacterized protein {ECO:0000313|EMBL:EEF34882.1}
TAIR10AT1G49850.14E-19RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2172427821728560-
GWHAAZE00000005mRNA2172427821728560-
GWHAAZE00000005exon2172831821728560-
GWHAAZE00000005exon2172670321726902-
GWHAAZE00000005exon2172538021725421-
GWHAAZE00000005exon2172427821724864-
GWHAAZE00000005CDS2172831821728560-
GWHAAZE00000005CDS2172670321726902-
GWHAAZE00000005CDS2172538021725421-
GWHAAZE00000005CDS2172446521724864-
GWHAAZE00000005three_prime_UTR2172427821724464-
Transcript Sequence

Network for GWHGAAZE018608

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_22402823.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.322
SRR3591706second leaf10.462
SRR3591707mature leaf9.337
SRR3591708Shoot apex18.403
SRR3591709Stem23.174
SRR3591710White floral bud14.421
SRR3591711White flower13.875
SRR3591712Green floral bud12.802
SRR3591713Yellow flower18.208
SRP173429 SRR8316895Juvenile bud stage 9.151
SRR8316896Juvenile bud stage 13.061
SRR8316897Juvenile bud stage 5.436
SRR8316894Third green stage 4.720
SRR8316900Third green stage 10.098
SRR8316901Third green stage 10.427
SRR8316898Complete white stage 6.109
SRR8316899Complete white stage 15.169
SRR8316903Complete white stage 7.954
SRR8316902Silver flowering stage6.345
SRR8316904Silver flowering stage8.705
SRR8316905Silver flowering stage3.165
SRR8316906Gold flowering stage 13.200
SRR8316907Gold flowering stage 16.388
SRR8316908Gold flowering stage 17.840
SRP132670SRR6706286Control7.917
SRR6706287Light intensity 50%7.760
SRR6706288Light intensity 20%7.827
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.211
CNS0095593Slightly white alabastrum(diploid) 210.498
CNS0095594Slightly white alabastrum(diploid) 310.115
CNS0095595Whole white alabastrum(diploid) 29.443
CNS0095596Whole white alabastrum(diploid) 310.379
CNS0095597Whole white alabastrum(diploid) 49.672
CNS0095598Silvery flower (diploied) 112.146
CNS0095599Silvery flower (diploied) 29.707
CNS0095600Silvery flower (diploied) 311.796
CNS0095601Golden flower (diploid) 112.857
CNS0095602Golden flower (diploid) 216.911
CNS0095603Golden flower (diploid) 313.210
CNS0095604Slightly white alabastrum(tetraploid) 19.323
CNS0095605Slightly white alabastrum(tetraploid) 27.131
CNS0095606Slightly white alabastrum(tetraploid) 313.103
CNS0095607Whole white alabastrum(tetraploid) 17.026
CNS0095608Whole white alabastrum(tetraploid) 28.973
CNS0095609Whole white alabastrum(tetraploid) 37.435
CNS0095610Silvery flower (tetraploid) 112.757
CNS0095611Silvery flower (tetraploid) 210.135
CNS0095612Silvery flower (tetraploid) 310.456
CNS0095613Golden flower (tetraploid) 111.854
CNS0095614Golden flower (tetraploid) 212.375
CNS0095615Golden flower (tetraploid) 312.706
CRA001975CRR073297Stem 117.036
CRR073298Stem 29.582
CRR073299Stem 314.003
CRR073300Leaf 111.369
CRR073301Leaf 210.397
CRR073302Leaf 310.992
CRR073303Juvenile bud 19.180
CRR073304Juvenile bud 27.257
CRR073305Juvenile bud 313.041
CRR073306Third green 16.566
CRR073307Third green 24.861
CRR073308Third green 35.049
CRR073309Second white 18.098
CRR073310Second white 26.337
CRR073311Second white 36.778
CRR073312Silver flowering 18.835
CRR073313Silver flowering 210.607
CRR073314Silver flowering 37.114
CRR073315Gold flowering 17.520
CRR073316Gold flowering 27.124
CRR073317Gold flowering 35.673
CRR073318Tawny withering 120.014
CRR073319Tawny withering 223.551
CRR073320Tawny withering 326.135