Gene detail

Detail information of GWHGAAZE018609

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088168.1	1.1419E-127	PREDICTED: probable prolyl 4-hydroxylase 9 [Sesamum indicum]
Swissprot	tr\|Q8VZJ7\|P4H9_ARATH	2E-125	Probable prolyl 4-hydroxylase 9 (Precursor)
trEMBL	tr\|D7SXT3\|D7SXT3_VITVI	7E-128	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22483.3}
TAIR10	AT4G33910.1	9E-101	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21736783	21741047	+
GWHAAZE00000005	mRNA	21736783	21741047	+
GWHAAZE00000005	exon	21736783	21736896	+
GWHAAZE00000005	exon	21738072	21738229	+
GWHAAZE00000005	exon	21739632	21739734	+
GWHAAZE00000005	exon	21740143	21740238	+
GWHAAZE00000005	exon	21740464	21740739	+
GWHAAZE00000005	exon	21740961	21741047	+
GWHAAZE00000005	CDS	21736783	21736896	+
GWHAAZE00000005	CDS	21738072	21738229	+
GWHAAZE00000005	CDS	21739632	21739734	+
GWHAAZE00000005	CDS	21740143	21740238	+
GWHAAZE00000005	CDS	21740464	21740739	+
GWHAAZE00000005	CDS	21740961	21741047	+

Transcript Sequence
>GWHTAAZE018631 GATGTTGGCGGTGTTCTATCGAGGCATAGACTACTTGAATCGGTGGACAAAGAAGATGAATCAATGCCCCGTGGAGAAAGTGGAGACTCGTTGCTCACTTCGATCCCATTTCAGGTTTTGAGTTGGAGACCGCGGACGGTTTATTTTCCTAATTTTGCAACTGCAGAACAATGCCAAACCATAATCGAAGTTGCAAGGTCAGAGCTTAAACCATCCACTCTTGCTCTGCGGAAGGGAGAAACTGCTGAGAGCACCAAGGGAGTTCGAACAAGTTCAGGCACATTCGTCGCTGCATGGGAAGACAGTACTGGAGTTTTGGATTATGTCGAGGAAAAAATAGCCAGGGCTACAATGATGCCAAGGAATCATGGAGAGGCATTCAATATTCTGCGGTATGAGATTGGGCAGCAATATATTTCTCACTATGACGCATTCAACCCCGCTGAGTATGGCCCTCAACAGAGCCAAAGGATTGCATCGTTCTTGTTGTATTTGTCTGATGTGGAAGAAGGCGGAGAGACCATGTTTCCTCTTGAGGTAAGATTAAAGATTGTAAGGATTTACCTTTTTATTGTTCTCTCTCTCTTTATATTCATATGTTTCCAATACTATTCTGATGTTTTTGATCAACAGGGCGACTCAAACAAGGTTTTCGATCACAAAGGCTGCAACGGTTTGAAAGTGAAGCCACGCCAAGGGGATGGGCTTCTGTTTTATTCAGTGTTTCCAAATGGAACAATTGATCAGGCATCTCTTCATGGAAGCTGTCCTGTGGTAAAAGGGGAGAAATGGGTAGCTACTAAGTGGATTAGAGATCACATACAAGACGATTAA

Network for GWHGAAZE018609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.7	2OG-FeII_Oxy_3	128	271	2.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418	molecular_function	L-ascorbic acid binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.774
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.266
	SRR3591709	Stem	2.735
	SRR3591710	White floral bud	2.157
	SRR3591711	White flower	0.312
	SRR3591712	Green floral bud	5.472
	SRR3591713	Yellow flower	0.335
SRP173429	SRR8316895	Juvenile bud stage	0.762
	SRR8316896	Juvenile bud stage	1.313
	SRR8316897	Juvenile bud stage	0.973
	SRR8316894	Third green stage	0.731
	SRR8316900	Third green stage	10.303
	SRR8316901	Third green stage	6.419
	SRR8316898	Complete white stage	1.420
	SRR8316899	Complete white stage	1.930
	SRR8316903	Complete white stage	1.281
	SRR8316902	Silver flowering stage	0.359
	SRR8316904	Silver flowering stage	0.396
	SRR8316905	Silver flowering stage	0.181
	SRR8316906	Gold flowering stage	0.960
	SRR8316907	Gold flowering stage	0.084
	SRR8316908	Gold flowering stage	1.905
SRP132670	SRR6706286	Control	6.311
	SRR6706287	Light intensity 50%	4.675
	SRR6706288	Light intensity 20%	5.201
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.232
	CNS0095593	Slightly white alabastrum(diploid) 2	4.186
	CNS0095594	Slightly white alabastrum(diploid) 3	4.313
	CNS0095595	Whole white alabastrum(diploid) 2	11.460
	CNS0095596	Whole white alabastrum(diploid) 3	16.230
	CNS0095597	Whole white alabastrum(diploid) 4	16.083
	CNS0095598	Silvery flower (diploied) 1	0.767
	CNS0095599	Silvery flower (diploied) 2	1.699
	CNS0095600	Silvery flower (diploied) 3	1.551
	CNS0095601	Golden flower (diploid) 1	5.792
	CNS0095602	Golden flower (diploid) 2	4.294
	CNS0095603	Golden flower (diploid) 3	4.848
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.308
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.182
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.793
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.362
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.868
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.383
	CNS0095610	Silvery flower (tetraploid) 1	11.187
	CNS0095611	Silvery flower (tetraploid) 2	11.413
	CNS0095612	Silvery flower (tetraploid) 3	10.635
	CNS0095613	Golden flower (tetraploid) 1	15.691
	CNS0095614	Golden flower (tetraploid) 2	20.665
	CNS0095615	Golden flower (tetraploid) 3	9.807
CRA001975	CRR073297	Stem 1	1.586
	CRR073298	Stem 2	2.281
	CRR073299	Stem 3	2.058
	CRR073300	Leaf 1	6.463
	CRR073301	Leaf 2	7.691
	CRR073302	Leaf 3	4.837
	CRR073303	Juvenile bud 1	8.274
	CRR073304	Juvenile bud 2	7.046
	CRR073305	Juvenile bud 3	1.863
	CRR073306	Third green 1	3.607
	CRR073307	Third green 2	3.587
	CRR073308	Third green 3	3.207
	CRR073309	Second white 1	1.627
	CRR073310	Second white 2	0.765
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	3.866
	CRR073313	Silver flowering 2	5.664
	CRR073314	Silver flowering 3	4.631
	CRR073315	Gold flowering 1	1.174
	CRR073316	Gold flowering 2	0.675
	CRR073317	Gold flowering 3	2.958
	CRR073318	Tawny withering 1	6.660
	CRR073319	Tawny withering 2	6.164
	CRR073320	Tawny withering 3	5.573