Gene detail

Detail information of GWHGAAZE018610

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15730.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q766C3\|NEP1_NEPGR	4E-72	Aspartic proteinase nepenthesin-1 (Precursor)
trEMBL	tr\|A0A068V4Q8\|A0A068V4Q8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_105 {ECO:0000313\|EMBL:CDP15730.1}
TAIR10	AT3G59080.1	4E-177	Eukaryotic aspartyl protease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21745463	21746875	+
GWHAAZE00000005	mRNA	21745463	21746875	+
GWHAAZE00000005	exon	21745463	21746875	+
GWHAAZE00000005	CDS	21745463	21746875	+

Transcript Sequence
>GWHTAAZE018632 GAGTTTGTGTTGTCGAAAAAACCCCAGTCGCCGGCTGTCAAACTCCACCTAAAGCACAGATCCCACGGTCAAAAAGAAGCCGGTAAAGAATCAGTACTCAAGTTTACTGCAAGAGACTCGATTAGAATCCAAACACTTCATACAAGAATCAAAGAGAAGAAAAATCAGAACACCGCCTCAAGGTTGAAGGAAAAATCAGAACAACAGCTTTATAAATCTCTTCCGGTGGAGTCTGGATTAATCTCCGGCCAGCTCACGGCTACACTGGAATCAGGGGTGAGCCTGGGTTCGGGGGAGTACTTCATGGATGTATTTGTGGGTACACCTCCTAAACACTATTCTTTGATTCTTGATACTGGTAGTGATCTTAATTGGATTCAATGTGTACCATGTTATGATTGTTTTGAACAAAATGGTCCCCATTACGCTCCGTTGGATTCCACTTCTTTTAAACAGATAAGCTGCCACGATCCCCGGTGTCAGCTAGTTTCGTCCCCCGACCCTCCACAGGTCTGTGAGGATAAAAAACATAACCAAACATGCCCTTACTTTTACTGGTACGGCGATAGCTCCAACACGACCGGAGACTTTGCGTTGGAGACCTTCACCGTGAACTTGACTTCACCTGCTGGAGAGCCAGAGCTCCGGAAGGTGGAGAATGTGATGTTTGGATGTGGGCATTGGAATAGAGGACTTTTCCATGGGGCAGCAGGGCTTTTAGGCTTAGGGAGAGGCCCACTCTCCTTTTCATCTCAGCTTCAATCCTTGTATGGCCACTCTTTCTCCTATTGCCTTGTGGACAGAAACAGCGATGCTAGTGTCACCAGCAAGTTGATCTTTGGGGAGGACAAGGATTTGTTAGCCCACCCGGAATTGAATTTCACTTCTTTGGTGTCTGGGGGAGAACAAAATCCAGTCGATACATTTTACTACGTTCAAATAAAATCGATTGTGGTCGGGGGAGAAGTGCTAAATATTCCTGCGGAGACGTGGAATTTGAGTGCACAAGGGGCAGGTGGTGGCACAATAGTCGATTCAGGCACTACGCTTAGTTATTTCGCGGATCCAGCCTATAAGATCATAAAGGAGGCATTCGAGAAGAAAGTGAACAACAAGTACCCAGTTGTAAATGATTTTCCCATGTTGAATCCTTGTTACAATGTGTCTGGCGTGGGGAAACTGGAGCTGCCCACATTCGGGATAGTGTTTGGGGATGGGGCAGTGTGGAATTTCCCGGTTGAAAATTACTTCATCAAGCTTGAACCGGAGGAGATCGTCTGTTTGGCGGTTTTAGGTACTCCGCGATCGGCTCTATCGATAATCGGAAACTACCAGCAGCAAAACTTTCATGTATTGTATGACACAAAAATGTCTAGATTGGGTTTTGCACCAGCAAAATGTGCTGAGGTTTAA

Network for GWHGAAZE018610

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0202

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14543.7	TAXi_N	100	281	6.20E-53
PF14541.7	TAXi_C	309	463	1.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.556
	SRR3591706	second leaf	1.827
	SRR3591707	mature leaf	2.768
	SRR3591708	Shoot apex	4.012
	SRR3591709	Stem	19.143
	SRR3591710	White floral bud	7.181
	SRR3591711	White flower	20.413
	SRR3591712	Green floral bud	3.054
	SRR3591713	Yellow flower	38.882
SRP173429	SRR8316895	Juvenile bud stage	4.950
	SRR8316896	Juvenile bud stage	2.004
	SRR8316897	Juvenile bud stage	2.747
	SRR8316894	Third green stage	2.507
	SRR8316900	Third green stage	2.053
	SRR8316901	Third green stage	3.259
	SRR8316898	Complete white stage	0.618
	SRR8316899	Complete white stage	11.809
	SRR8316903	Complete white stage	0.898
	SRR8316902	Silver flowering stage	1.501
	SRR8316904	Silver flowering stage	2.336
	SRR8316905	Silver flowering stage	1.206
	SRR8316906	Gold flowering stage	14.669
	SRR8316907	Gold flowering stage	9.781
	SRR8316908	Gold flowering stage	30.643
SRP132670	SRR6706286	Control	2.705
	SRR6706287	Light intensity 50%	3.546
	SRR6706288	Light intensity 20%	2.458
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.335
	CNS0095593	Slightly white alabastrum(diploid) 2	10.917
	CNS0095594	Slightly white alabastrum(diploid) 3	8.009
	CNS0095595	Whole white alabastrum(diploid) 2	5.219
	CNS0095596	Whole white alabastrum(diploid) 3	0.512
	CNS0095597	Whole white alabastrum(diploid) 4	6.025
	CNS0095598	Silvery flower (diploied) 1	28.132
	CNS0095599	Silvery flower (diploied) 2	14.552
	CNS0095600	Silvery flower (diploied) 3	10.167
	CNS0095601	Golden flower (diploid) 1	27.679
	CNS0095602	Golden flower (diploid) 2	29.483
	CNS0095603	Golden flower (diploid) 3	27.543
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.262
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.251
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.791
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.330
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.248
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.154
	CNS0095610	Silvery flower (tetraploid) 1	5.085
	CNS0095611	Silvery flower (tetraploid) 2	2.109
	CNS0095612	Silvery flower (tetraploid) 3	3.457
	CNS0095613	Golden flower (tetraploid) 1	9.781
	CNS0095614	Golden flower (tetraploid) 2	11.056
	CNS0095615	Golden flower (tetraploid) 3	12.554
CRA001975	CRR073297	Stem 1	3.915
	CRR073298	Stem 2	4.643
	CRR073299	Stem 3	4.163
	CRR073300	Leaf 1	6.071
	CRR073301	Leaf 2	9.121
	CRR073302	Leaf 3	4.296
	CRR073303	Juvenile bud 1	6.118
	CRR073304	Juvenile bud 2	4.118
	CRR073305	Juvenile bud 3	13.480
	CRR073306	Third green 1	0.914
	CRR073307	Third green 2	1.376
	CRR073308	Third green 3	2.036
	CRR073309	Second white 1	4.055
	CRR073310	Second white 2	6.414
	CRR073311	Second white 3	6.603
	CRR073312	Silver flowering 1	45.361
	CRR073313	Silver flowering 2	39.520
	CRR073314	Silver flowering 3	34.827
	CRR073315	Gold flowering 1	7.748
	CRR073316	Gold flowering 2	11.840
	CRR073317	Gold flowering 3	10.413
	CRR073318	Tawny withering 1	15.086
	CRR073319	Tawny withering 2	36.859
	CRR073320	Tawny withering 3	10.637