Detail information of GWHGAAZE018619


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264651.10PREDICTED: zinc finger protein-like 1 [Vitis vinifera]
trEMBLtr|D7SXR3|D7SXR3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22463.3}
TAIR10AT2G14835.23E-113RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2185032221856261+
GWHAAZE00000005mRNA2185032221856261+
GWHAAZE00000005exon2185032221850351+
GWHAAZE00000005exon2185111421851234+
GWHAAZE00000005exon2185134421851438+
GWHAAZE00000005exon2185193021852001+
GWHAAZE00000005exon2185313921853444+
GWHAAZE00000005exon2185393421854042+
GWHAAZE00000005exon2185489621855082+
GWHAAZE00000005exon2185576421856261+
GWHAAZE00000005CDS2185032221850351+
GWHAAZE00000005CDS2185111421851234+
GWHAAZE00000005CDS2185134421851438+
GWHAAZE00000005CDS2185193021852001+
GWHAAZE00000005CDS2185313921853444+
GWHAAZE00000005CDS2185393421854042+
GWHAAZE00000005CDS2185489621855082+
GWHAAZE00000005CDS2185576421855851+
GWHAAZE00000005three_prime_UTR2185585221856261+
Transcript Sequence

Network for GWHGAAZE018619

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.209
SRR3591706second leaf17.118
SRR3591707mature leaf15.521
SRR3591708Shoot apex29.220
SRR3591709Stem27.859
SRR3591710White floral bud21.209
SRR3591711White flower21.916
SRR3591712Green floral bud26.210
SRR3591713Yellow flower21.288
SRP173429 SRR8316895Juvenile bud stage 19.098
SRR8316896Juvenile bud stage 24.337
SRR8316897Juvenile bud stage 13.175
SRR8316894Third green stage 9.699
SRR8316900Third green stage 23.153
SRR8316901Third green stage 26.596
SRR8316898Complete white stage 9.342
SRR8316899Complete white stage 28.400
SRR8316903Complete white stage 14.762
SRR8316902Silver flowering stage11.282
SRR8316904Silver flowering stage14.872
SRR8316905Silver flowering stage5.366
SRR8316906Gold flowering stage 19.200
SRR8316907Gold flowering stage 19.172
SRR8316908Gold flowering stage 19.568
SRP132670SRR6706286Control23.699
SRR6706287Light intensity 50%23.032
SRR6706288Light intensity 20%25.187
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.719
CNS0095593Slightly white alabastrum(diploid) 226.931
CNS0095594Slightly white alabastrum(diploid) 325.197
CNS0095595Whole white alabastrum(diploid) 222.947
CNS0095596Whole white alabastrum(diploid) 327.276
CNS0095597Whole white alabastrum(diploid) 420.422
CNS0095598Silvery flower (diploied) 124.286
CNS0095599Silvery flower (diploied) 222.553
CNS0095600Silvery flower (diploied) 324.249
CNS0095601Golden flower (diploid) 120.319
CNS0095602Golden flower (diploid) 227.241
CNS0095603Golden flower (diploid) 324.413
CNS0095604Slightly white alabastrum(tetraploid) 126.616
CNS0095605Slightly white alabastrum(tetraploid) 225.154
CNS0095606Slightly white alabastrum(tetraploid) 335.070
CNS0095607Whole white alabastrum(tetraploid) 120.032
CNS0095608Whole white alabastrum(tetraploid) 219.502
CNS0095609Whole white alabastrum(tetraploid) 326.560
CNS0095610Silvery flower (tetraploid) 124.854
CNS0095611Silvery flower (tetraploid) 225.084
CNS0095612Silvery flower (tetraploid) 325.238
CNS0095613Golden flower (tetraploid) 118.837
CNS0095614Golden flower (tetraploid) 225.065
CNS0095615Golden flower (tetraploid) 319.841
CRA001975CRR073297Stem 128.052
CRR073298Stem 225.402
CRR073299Stem 325.376
CRR073300Leaf 125.254
CRR073301Leaf 228.089
CRR073302Leaf 324.676
CRR073303Juvenile bud 124.481
CRR073304Juvenile bud 220.729
CRR073305Juvenile bud 327.528
CRR073306Third green 110.847
CRR073307Third green 210.862
CRR073308Third green 311.411
CRR073309Second white 113.056
CRR073310Second white 214.401
CRR073311Second white 313.448
CRR073312Silver flowering 113.852
CRR073313Silver flowering 213.299
CRR073314Silver flowering 313.786
CRR073315Gold flowering 111.718
CRR073316Gold flowering 217.192
CRR073317Gold flowering 313.953
CRR073318Tawny withering 137.838
CRR073319Tawny withering 232.182
CRR073320Tawny withering 343.730