Gene detail

Detail information of GWHGAAZE018622

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI22460.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9LJN4\|BXL5_ARATH	Probable beta-D-xylosidase 5 (Precursor)
trEMBL	tr\|D7SXR0\|D7SXR0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22460.3}
TAIR10	AT3G19620.1	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21879872	21885473	+
GWHAAZE00000005	mRNA	21879872	21885473	+
GWHAAZE00000005	exon	21879872	21880609	+
GWHAAZE00000005	exon	21881981	21882150	+
GWHAAZE00000005	exon	21883122	21883219	+
GWHAAZE00000005	exon	21883332	21884096	+
GWHAAZE00000005	exon	21884929	21885270	+
GWHAAZE00000005	exon	21885424	21885473	+
GWHAAZE00000005	CDS	21879872	21880609	+
GWHAAZE00000005	CDS	21881981	21882150	+
GWHAAZE00000005	CDS	21883122	21883219	+
GWHAAZE00000005	CDS	21883332	21884096	+
GWHAAZE00000005	CDS	21884929	21885270	+
GWHAAZE00000005	CDS	21885424	21885473	+

Transcript Sequence
>GWHTAAZE018644 ATGTCCTCAAACCCACCTCCTACACAAACACCTAAAACTAAACAATTAAAAATAAAAATGAAAATCCATCTCTTTCTCTCCCCTTTCCTCTTCTCACTCTTCATTTTAACCATCCCACCCACCACCCATCAATACGCTTGTGACAAATCCAACCCCACCACAGCCACATTCCCATTTTGCAACACTACATTACCCTACTCAGACAGAGCCAAAGACTTGGTGTCGCGCTTGAATCTTACAGAAAAGGCGCAACAGCTTGTCAACGGGGCCACAGGAGTGCCCAGGCTGGGCGTTTCCCCGTACGAATGGTGGTCAGAAATCCTGCACGGTGTCTCGAACACCGGGCCCGGGGTGCATTTCAATGCGACCGTGCCTGGGGCCACCAGCTTCCCGGCCGTGATTCTGTCAGCAGCTAGCTTCAATGAGTCGCTTTGGTACGAGATGGGGAGGGCGGCGTCAACCGAGGGGCGGGCCATGTACAATGTGGGCTTGGCAGGGTTGACCTATTGGAGCCCAAACGTGAATGTGTTTAGGGACCCAAGGTGGGGTAGGGGGCAGGAGACCCCAGGGGAGGACCCGTTGCTGGTGTCAAAGTATGGGGTGAAGTATGTGAGAGGGTTACAAGAGGTGGGGGAGACTGGGAGTGATAGGCTAAAGGTGGCTAGTTGCTGTAAGCATTATACTGCTTATGATATTGATAATTGGAAAGGCAATGATAGATTTCACTTTGACGCCAAGGTAACAGCACAAGATTTGGAGGACACATATCAGCCACCATTCAAGAGCTGTGTAGAAGAGGGAGATGTGAGTAGTGTCATGTGTTCTTACAACCGGGTTAACGGAGTACCCACCTGTGCCGACCCGAATCTTCTCCAAGGGGTTATCAGAGGCCAATGGGGTCTTAACGGATACATTGCTTCAGACTGTGACTCTATCGAGGTTTATCACAACTCTATACATTACACTTCTACCCCTGAGGACGCTGTTGCCCTTGCCTTGAAAGCTGGCTTAAACATGAATTGTGGGGATTTCTTAGCCAAATACACAGAGAATGCAGTAAACTTAAACAAAGTCAATGAGTCAATAGTAGACCAAGCCTTAATATACAACTACATAGTTCTAATGAGGCTAGGCTTCTTTGATGGTGACCCGACATCACTCCCCTTTGGACAACTCGGACTGTCCGATGTATGCACCGATGATCACCAGCACCTATCAATCGAGGCCGCAAAGCAGGCGATAGTTTTGCTAGACAACAATGGAGTCCTCCCTTTATCAAAAAACACCACCAAGAACTTAGCCATTATAGGCCCCAATGCCAATGCAACTGAAGCCATGATTAGCATATACGCTGGGGTACCCTGCCAGTACACTAGCCCTTTAGCAGGGTTGCAAAAGTATGTGCAAAATGTTAGTTACGAGCCAGGGTGTGGGAACGTGGGGTGCACCAATGGGAGTCAAATTGAGGCGGCGGTTGCGGCTGCGGCTAAGGCAGATGTGGTGGTGGTAGTGGTGGGGCTTGATCAGTCCATTGAGAGAGAGGGTTTGGATAGGGAGAACTTGACATTGCCTGGATTTCAAGAGAGGTTGGTGAGGGAGGTGGCTAATGCAACTAGTGGGAGTGTGGTGCTTGTGGTGATGAGTGGTGGTCCAGTTGATGTTGGGTTTGCTAAGAATATCAGTAAGATTGGGGCTATTTTGTGGGTTGGGTACCCTGGTCAAGATGGGGGGGATGCCATTGCTCAAGTCCTTTTTGGAGACTATAACCCAGCCATTGACGTCTCCGGGATCAACTGCCAAGACCTAAAGTTCAAGGCTGTGATCGGGGTGAAGAACGATGGGAAGTTGGATGGGGCCCACGTCGTGCTGGCATTTTGGAGGCCACCGCTTGGCATTGGGGCCCCAAGGGAGCAATTGGTGGGGTTTCAGAGGGTGGAGATGAGAAGGGGTGGGGTGAATGTGAGTGTGGAGTTGGATGTGTGTAGGGATTTGAGTGTGGTGGATGGGGAGGGGAGGAGGAAGATGATGATCGGGCAGCATAGTATTGTGGTTGGGGCTAAGAGTGAGAGACAAGTGAAGCATTATGTTGATGTTAGGTTGGGTGCAAGTGAAGGAGGAAACAATAAGGGGAAGAAGAAAACGCTAGAGGAAGGGCGGGCTTGA

Network for GWHGAAZE018622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0087

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	126	366	1.70E-36
PF01915.23	Glyco_hydro_3_C	414	591	4.50E-45
PF14310.7	Fn3-like	620	688	7.40E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15920	XYL4	Metabolic pathways	map01100
K15920	XYL4	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.968
	SRR3591706	second leaf	4.238
	SRR3591707	mature leaf	1.319
	SRR3591708	Shoot apex	0.847
	SRR3591709	Stem	14.844
	SRR3591710	White floral bud	170.331
	SRR3591711	White flower	92.178
	SRR3591712	Green floral bud	52.820
	SRR3591713	Yellow flower	56.696
SRP173429	SRR8316895	Juvenile bud stage	1.462
	SRR8316896	Juvenile bud stage	2.754
	SRR8316897	Juvenile bud stage	2.276
	SRR8316894	Third green stage	2.030
	SRR8316900	Third green stage	10.430
	SRR8316901	Third green stage	10.112
	SRR8316898	Complete white stage	5.584
	SRR8316899	Complete white stage	2.755
	SRR8316903	Complete white stage	11.484
	SRR8316902	Silver flowering stage	6.293
	SRR8316904	Silver flowering stage	28.655
	SRR8316905	Silver flowering stage	5.717
	SRR8316906	Gold flowering stage	11.510
	SRR8316907	Gold flowering stage	9.901
	SRR8316908	Gold flowering stage	25.922
SRP132670	SRR6706286	Control	22.650
	SRR6706287	Light intensity 50%	18.573
	SRR6706288	Light intensity 20%	14.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.652
	CNS0095593	Slightly white alabastrum(diploid) 2	3.565
	CNS0095594	Slightly white alabastrum(diploid) 3	5.590
	CNS0095595	Whole white alabastrum(diploid) 2	4.159
	CNS0095596	Whole white alabastrum(diploid) 3	11.042
	CNS0095597	Whole white alabastrum(diploid) 4	2.951
	CNS0095598	Silvery flower (diploied) 1	10.633
	CNS0095599	Silvery flower (diploied) 2	23.244
	CNS0095600	Silvery flower (diploied) 3	24.637
	CNS0095601	Golden flower (diploid) 1	5.809
	CNS0095602	Golden flower (diploid) 2	11.615
	CNS0095603	Golden flower (diploid) 3	11.158
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.080
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.720
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.167
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.329
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.274
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.766
	CNS0095610	Silvery flower (tetraploid) 1	64.072
	CNS0095611	Silvery flower (tetraploid) 2	29.898
	CNS0095612	Silvery flower (tetraploid) 3	50.563
	CNS0095613	Golden flower (tetraploid) 1	1.587
	CNS0095614	Golden flower (tetraploid) 2	47.972
	CNS0095615	Golden flower (tetraploid) 3	42.925
CRA001975	CRR073297	Stem 1	1.016
	CRR073298	Stem 2	0.980
	CRR073299	Stem 3	0.713
	CRR073300	Leaf 1	3.719
	CRR073301	Leaf 2	2.887
	CRR073302	Leaf 3	4.248
	CRR073303	Juvenile bud 1	7.391
	CRR073304	Juvenile bud 2	19.318
	CRR073305	Juvenile bud 3	4.641
	CRR073306	Third green 1	24.990
	CRR073307	Third green 2	34.619
	CRR073308	Third green 3	86.687
	CRR073309	Second white 1	2.620
	CRR073310	Second white 2	14.140
	CRR073311	Second white 3	2.671
	CRR073312	Silver flowering 1	0.273
	CRR073313	Silver flowering 2	0.909
	CRR073314	Silver flowering 3	0.643
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.146
	CRR073317	Gold flowering 3	0.167
	CRR073318	Tawny withering 1	1.409
	CRR073319	Tawny withering 2	1.279
	CRR073320	Tawny withering 3	2.574