Detail information of GWHGAAZE018626


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO57896.10hypothetical protein CISIN_1g005785mg [Citrus sinensis]
Swissprottr|Q8RXL1|REV1_ARATH4E-29DNA repair protein REV1
trEMBLtr|A0A067F3W4|A0A067F3W4_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO57896.1}
TAIR10AT1G49980.10DNA/RNA polymerases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2191016421919263-
GWHAAZE00000005mRNA2191016421919263-
GWHAAZE00000005exon2191918221919263-
GWHAAZE00000005exon2191855221918724-
GWHAAZE00000005exon2191762021917793-
GWHAAZE00000005exon2191731321917436-
GWHAAZE00000005exon2191712121917221-
GWHAAZE00000005exon2191686821916954-
GWHAAZE00000005exon2191584321915938-
GWHAAZE00000005exon2191562621915746-
GWHAAZE00000005exon2191366521913793-
GWHAAZE00000005exon2191180521911896-
GWHAAZE00000005exon2191138121911536-
GWHAAZE00000005exon2191016421910565-
GWHAAZE00000005CDS2191918221919263-
GWHAAZE00000005CDS2191855221918724-
GWHAAZE00000005CDS2191762021917793-
GWHAAZE00000005CDS2191731321917436-
GWHAAZE00000005CDS2191712121917221-
GWHAAZE00000005CDS2191686821916954-
GWHAAZE00000005CDS2191584321915938-
GWHAAZE00000005CDS2191562621915746-
GWHAAZE00000005CDS2191366521913793-
GWHAAZE00000005CDS2191180521911896-
GWHAAZE00000005CDS2191138121911536-
GWHAAZE00000005CDS2191016421910565-
Transcript Sequence

Network for GWHGAAZE018626

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00817.21IMS1072503.40E-45
PF11799.9IMS_C3384305.60E-15
PF18439.2zf_UBZ5105432.30E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03511POLK Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0003684molecular_functiondamaged DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.519
SRR3591706second leaf1.869
SRR3591707mature leaf3.144
SRR3591708Shoot apex4.227
SRR3591709Stem7.188
SRR3591710White floral bud0.842
SRR3591711White flower2.844
SRR3591712Green floral bud1.781
SRR3591713Yellow flower2.238
SRP173429 SRR8316895Juvenile bud stage 1.569
SRR8316896Juvenile bud stage 2.608
SRR8316897Juvenile bud stage 1.758
SRR8316894Third green stage 1.062
SRR8316900Third green stage 2.699
SRR8316901Third green stage 1.952
SRR8316898Complete white stage 0.542
SRR8316899Complete white stage 3.447
SRR8316903Complete white stage 1.422
SRR8316902Silver flowering stage0.701
SRR8316904Silver flowering stage1.334
SRR8316905Silver flowering stage0.463
SRR8316906Gold flowering stage 3.944
SRR8316907Gold flowering stage 2.289
SRR8316908Gold flowering stage 4.663
SRP132670SRR6706286Control1.832
SRR6706287Light intensity 50%1.775
SRR6706288Light intensity 20%1.950
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.304
CNS0095593Slightly white alabastrum(diploid) 22.318
CNS0095594Slightly white alabastrum(diploid) 32.378
CNS0095595Whole white alabastrum(diploid) 21.795
CNS0095596Whole white alabastrum(diploid) 32.227
CNS0095597Whole white alabastrum(diploid) 41.735
CNS0095598Silvery flower (diploied) 12.964
CNS0095599Silvery flower (diploied) 21.508
CNS0095600Silvery flower (diploied) 31.475
CNS0095601Golden flower (diploid) 11.477
CNS0095602Golden flower (diploid) 21.115
CNS0095603Golden flower (diploid) 31.848
CNS0095604Slightly white alabastrum(tetraploid) 10.984
CNS0095605Slightly white alabastrum(tetraploid) 20.515
CNS0095606Slightly white alabastrum(tetraploid) 31.401
CNS0095607Whole white alabastrum(tetraploid) 11.071
CNS0095608Whole white alabastrum(tetraploid) 20.509
CNS0095609Whole white alabastrum(tetraploid) 30.559
CNS0095610Silvery flower (tetraploid) 11.383
CNS0095611Silvery flower (tetraploid) 20.613
CNS0095612Silvery flower (tetraploid) 31.198
CNS0095613Golden flower (tetraploid) 10.934
CNS0095614Golden flower (tetraploid) 20.892
CNS0095615Golden flower (tetraploid) 30.378
CRA001975CRR073297Stem 12.463
CRR073298Stem 21.514
CRR073299Stem 30.913
CRR073300Leaf 11.859
CRR073301Leaf 21.195
CRR073302Leaf 31.116
CRR073303Juvenile bud 10.696
CRR073304Juvenile bud 20.389
CRR073305Juvenile bud 31.030
CRR073306Third green 10.003
CRR073307Third green 20.071
CRR073308Third green 30.961
CRR073309Second white 10.099
CRR073310Second white 21.103
CRR073311Second white 30.297
CRR073312Silver flowering 10.342
CRR073313Silver flowering 20.028
CRR073314Silver flowering 30.748
CRR073315Gold flowering 10.565
CRR073316Gold flowering 21.996
CRR073317Gold flowering 30.490
CRR073318Tawny withering 11.544
CRR073319Tawny withering 22.810
CRR073320Tawny withering 32.488