Gene detail

Detail information of GWHGAAZE018637

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007018369.1	Tubulin alpha-2 chain [Theobroma cacao]
Swissprot	tr\|P33629\|TBA_PRUDU	Tubulin alpha chain
trEMBL	tr\|A0A061FM71\|A0A061FM71_THECC	Tubulin alpha-2 chain {ECO:0000313\|EMBL:EOY15594.1}
TAIR10	AT1G50010.1	tubulin alpha-2 chain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22119952	22122602	+
GWHAAZE00000005	mRNA	22119952	22122602	+
GWHAAZE00000005	exon	22119952	22120044	+
GWHAAZE00000005	exon	22121098	22121332	+
GWHAAZE00000005	exon	22121423	22121793	+
GWHAAZE00000005	exon	22121949	22122602	+
GWHAAZE00000005	CDS	22119952	22120044	+
GWHAAZE00000005	CDS	22121098	22121332	+
GWHAAZE00000005	CDS	22121423	22121793	+
GWHAAZE00000005	CDS	22121949	22122602	+

Transcript Sequence
>GWHTAAZE018659 ATGAGGGAGTGCATCTCGATTCACATTGGTCAGGCCGGTATTCAGGTCGGCAACGCTTGCTGGGAACTCTATTGCCTCGAGCATGGTATTCAGCCTGATGGCCAGATGCCCAGTGACAAGACTGTTGGTGGAGGCGACGATGCCTTCAACACCTTTTTCAGTGAAACTGGTGCTGGAAAGCATGTCCCTCGTGCTGTCTTTGTTGATCTTGAACCCACTGTTATTGATGAAGTGAGGACTGGTACTTATCGCCAGCTCTTCCACCCAGAACAGCTGATCAGTGGCAAAGAAGATGCTGCTAACAACTTTGCCCGTGGCCACTATACAATTGGGAAAGAGATTGTTGATCTCTGTTTGGACCGTATCAGAAAGCTTGCTGACAACTGCACTGGTCTCCAAGGTTTCCTTGTTTTCAATGCTGTTGGTGGGGGCACTGGTTCTGGTTTGGGCTCTTTGCTTTTGGAGCGTCTTTCTGTTGACTATGGGAAGAAATCAAAACTCGGTTTCACTGTCTATCCATCCCCACAGGTCTCCACATCTGTTGTTGAGCCTTACAACAGTGTCCTCTCAACCCATTCCCTCTTGGAACACACTGATGTTGCTATTCTTCTTGACAATGAGGCCATCTATGATATCTGCAGGCGCTCACTTGACATTGAGCGACCTACCTACACCAACCTCAACAGGCTTGTCTCTCAGGTGATTTCCTCCTTGACGGCTTCCCTTAGGTTCGATGGTGCCTTGAATGTGGATGTGACTGAATTCCAAACCAACTTAGTCCCCTACCCAAGAATCCACTTCATGCTTTCATCTTACGCACCCGTAATCTCAGCCGAGAAAGCATACCACGAGCAACTCTCAGTTGCCGAAATTACCAACAGTGCATTTGAGCCCTCATCCATGATGGCCAAGTGTGATCCCCGCCATGGCAAATACATGGCGTGCTGCCTCATGTACCGTGGTGATGTTGTGCCCAAGGATGTGAATGCAGCAGTTGCAACCATCAAGACCAAGCGTACCATCCAGTTTGTTGACTGGTGCCCCACCGGATTCAAGTGTGGTATCAACTACCAGCCCCCCACCGTTGTTCCTGGAGGTGATCTGGCCAAGGTGCAGAGAGCTGTTTGTATGATCTCCAACTCGACCAGTGTGGCTGAGGTGTTCTCGCGTATTGACCACAAGTTTGATCTGATGTATGCCAAGCGTGCCTTTGTGCATTGGTATGTGGGCGAGGGTATGGAGGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCTCTTGAGAAAGACTATGAAGAAGTTGGTGCTGAAGGAGCTGAGGATGAAGGCGATGAAGGTGAGGAGTATTGA

Network for GWHGAAZE018637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	3	213	5.80E-68
PF03953.18	Tubulin_C	263	392	2.30E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07374	TUBA	Phagosome	map04145
		Apoptosis	map04210
		Tight junction	map04530
		Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0005200	molecular_function	structural constituent of cytoskeleton

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1173.334
	SRR3591706	second leaf	493.910
	SRR3591707	mature leaf	331.706
	SRR3591708	Shoot apex	631.608
	SRR3591709	Stem	1222.569
	SRR3591710	White floral bud	882.762
	SRR3591711	White flower	183.160
	SRR3591712	Green floral bud	2152.888
	SRR3591713	Yellow flower	87.883
SRP173429	SRR8316895	Juvenile bud stage	524.256
	SRR8316896	Juvenile bud stage	717.552
	SRR8316897	Juvenile bud stage	333.834
	SRR8316894	Third green stage	446.328
	SRR8316900	Third green stage	1960.769
	SRR8316901	Third green stage	1581.742
	SRR8316898	Complete white stage	299.875
	SRR8316899	Complete white stage	1730.141
	SRR8316903	Complete white stage	372.999
	SRR8316902	Silver flowering stage	50.309
	SRR8316904	Silver flowering stage	87.388
	SRR8316905	Silver flowering stage	40.754
	SRR8316906	Gold flowering stage	64.584
	SRR8316907	Gold flowering stage	53.999
	SRR8316908	Gold flowering stage	57.800
SRP132670	SRR6706286	Control	2828.896
	SRR6706287	Light intensity 50%	3161.084
	SRR6706288	Light intensity 20%	3500.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1011.122
	CNS0095593	Slightly white alabastrum(diploid) 2	1167.537
	CNS0095594	Slightly white alabastrum(diploid) 3	826.325
	CNS0095595	Whole white alabastrum(diploid) 2	1496.477
	CNS0095596	Whole white alabastrum(diploid) 3	1865.073
	CNS0095597	Whole white alabastrum(diploid) 4	1473.950
	CNS0095598	Silvery flower (diploied) 1	301.870
	CNS0095599	Silvery flower (diploied) 2	413.777
	CNS0095600	Silvery flower (diploied) 3	355.762
	CNS0095601	Golden flower (diploid) 1	275.326
	CNS0095602	Golden flower (diploid) 2	220.842
	CNS0095603	Golden flower (diploid) 3	219.986
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1512.987
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1418.813
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1862.410
	CNS0095607	Whole white alabastrum(tetraploid) 1	1177.371
	CNS0095608	Whole white alabastrum(tetraploid) 2	1270.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	1820.779
	CNS0095610	Silvery flower (tetraploid) 1	246.192
	CNS0095611	Silvery flower (tetraploid) 2	287.117
	CNS0095612	Silvery flower (tetraploid) 3	251.515
	CNS0095613	Golden flower (tetraploid) 1	89.759
	CNS0095614	Golden flower (tetraploid) 2	284.423
	CNS0095615	Golden flower (tetraploid) 3	83.937
CRA001975	CRR073297	Stem 1	2060.808
	CRR073298	Stem 2	1991.920
	CRR073299	Stem 3	2431.144
	CRR073300	Leaf 1	3480.011
	CRR073301	Leaf 2	3150.163
	CRR073302	Leaf 3	4622.248
	CRR073303	Juvenile bud 1	4419.044
	CRR073304	Juvenile bud 2	4409.457
	CRR073305	Juvenile bud 3	3133.578
	CRR073306	Third green 1	696.593
	CRR073307	Third green 2	926.543
	CRR073308	Third green 3	662.634
	CRR073309	Second white 1	112.962
	CRR073310	Second white 2	100.554
	CRR073311	Second white 3	53.638
	CRR073312	Silver flowering 1	88.330
	CRR073313	Silver flowering 2	94.304
	CRR073314	Silver flowering 3	62.468
	CRR073315	Gold flowering 1	528.606
	CRR073316	Gold flowering 2	479.025
	CRR073317	Gold flowering 3	520.134
	CRR073318	Tawny withering 1	1438.424
	CRR073319	Tawny withering 2	969.679
	CRR073320	Tawny withering 3	1701.963